RNA id: TU1933186


Basic Information

Item Value
RNA id TU1933186
length 3175
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1690176
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36409242 ~ 36412502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGATGTAGTTCAGGCCAGTGAAATACAAATGACAAAATACTCAAAAGTaattaaaaatatgtatttaaaatACATGTAACATAGATACTGCCCATGTCTGGTTCTAGCCAAGCGTTTAGAAGAGTCAGGACAAGTGATAAATCCATTACATGGCCCCATCAAACATCAATGTTTTGAAGTGAAACACAACTTACGTAATTTACAAATGTTACATCCAGTCTCACAATTGGAAGTCTGATTTAATCATTGGAAAAAAATGGAAAGTATTTCTGTCTGCCTATGAacgagttgaatagaaggagttgaatagaaggtgtTGAATAGAAGGTTGTCCAGTTGAATTGCTAATATAGTAATAGCCTTGACCTCTATGACAGCTTTTACATCTGGGATGACTGAAAACCTGATGATAGGAGCCTCTGCTTTGTAGTTACTGTATTTTATCCCTCGGACAGAGCCATGTGCTAAAGGACTTATGTCAAACTGTCATAATAACAGTTTTAACTTCAATATTTCAAATCATCTCAATAATGTTGTACACAATCTGTTGGATCACTTGATGTATTTGCATAGCCATGGGCAGGGGGCCTGGGTTTCGGGTAAAGCCCCACATGCGAGAGCAATTTTACAGTGCATTACTATAACCTATATGTCTAGGCCTCTATGTACGGTGAACAAATGGTAGCATAAGTTAGCGGTATAGCTGAGACAAACGCACCGTCTATAGTAGAGACGGTGTTCCTGTTTTGGGATAGCCTAGGCCCTACAGATGTAGAATATTAATTTGATCacacttttgttgctgagaattttcctgcactgcaggaaatgcaaacttgtggtGTATTTGAGTTTAAAAATGCTTGTAGTGTGTAATTTCCTCTtagacattattttcctgctgtagcaaactgtctcaaattaagatcctacctGTATGCATCCTTCTTTCCTCCCATCCTTGAACAAATCACAGATAGATGGCTTGCACGAAAATGTTTGTTTAATTGTGTGAAAATATACTTAGTTTTTACATTAGCCTACTTTGGAAAATCTGTACAAGCATTTGGATTGGTCTGTTTTGTTGATATTCTAACTCCCTTTTTACTAGCCTATGTGTTTACCCCTCTACGGGCGGTTTTGATGATGGAGGCTGGATTCCAAAAGGATGCAAACATGTATTACGAGCCATGCTTCACAGGTAGCCTATGTCACAGCGGTCCGTTTTTGCTTCCCCTTATGAGTAGGGgggtaggatttttttatttttttatttaactagacaagtcagttaagaaaaaattctaccctggccaaaccattccctaacccggacgaggctgggccaattgtgcgccgccctatgggactcctgatcccggccggttgtgatacagcccgggattgaacctggtctgtagtgacacctctaacactgcagtgccttagaccgctgcgccactcaggatcccCAACTGAGGATAAACTGAGGCCAAATCTTCCTCTGTGTTCGAGAGACCGAGAGGGGCAGCCGTGGTGCTCTCCGAGGTGAAATTAAATATTTAAGAACAGATCGAAATGTTCCACGTAACAACTTTTTAGGCACAGTTTtctaatattattataatatatttgtCAGGTAGGGTGTCAGAAAGGCCTACGGGTCTAAGTACTCAACAACTGACACTCAATAACATTTTCCTTATTTTTTCACTGCTGGAAATGTGCCTTTGTAGCCTATTGTCTTTTGCCATATGTTCCAAATGTCACTTTGCTTTTAACTCATTCTCTGAGTTATGTCGATGTAGGTCAGAAGAGCATCTTTAAAAACTTTATAATGGCCATTAACTGCACTGTAAAATATGTTCTCAAAAGAAGGATAATGAGTTGAGAAGatgtcctctctctgttgctgAAGGTCAAGCTGGCCATCAAGGGGGTCGTTCCCGAAGACCTCGGGGTGGGTAAGGCTTCCTCCGTGTCTGATGTAATCTGCTGCTAGAACGTTGGCTGGGGGGAGGAGATCTTCAGTGATTCTCGCTGCCTTTAGGTGGTTGGCAAACAAAACATCTGGAATGCCTTGGCGGGAAATGGTATGGGCATTCAATGCTGGAATTAAGTTATCTATTCCAGTTGTGCAGCATCTTCTTGCAAACGAGGAGACGCAGAACTTGGTACACAGGTCATCAATGTCCAACAAACCATCGCTTGTCATGCTGCATAGTGCGTGCTTGATGGGGTCATTTACCCTGGCATTGATTTCAACCCACTTTCTCTCTGCTTCTTGATTCTGTCTGGATTCACTCTGAATGTAAGGGGGCCTGTTGATATTGGTGCGATGTGCTTGGAGGTTGTCTTGCTGGTATAGACACAGGTAGAATTCCTTACTGTAGTCAACACTTAACTGATCGAACAAGCCATGTTTCAGACAGATGTCTCTGTAGATCTCATCATAAATGGTCAGGTTGTTCTTGATTGGCATTACTGAAAACCCCAAAATTTTGCCACTGAAACTGTCAGATGCCAGAACTTCAGTGACACCAAAATCATTGAGCTTCTCATTTTGATCCATGTAAAGTTGTTGTCCCACATATTCTGTAGGGTACACGTGAGGATTCATCTGGCTGGCGGTGCCCTCTCTTCGCATTTGAGTGTAGACTGGTTTCATCAGTATCTGTGCCTGTCTGACGCTTCTCTCTCCCAACCTGaagccagcagctcttagcataCCTGTCATGACCTTCCGGCCACAAACTGGTCCACTTCTAGTGACCGCTGCAACGATAGCATTAACACCTTCTCTTCCAAGTCGTGAGTAGTCATAGCGATGTATATCTCGTGCAGCGCAGAACTGATAGATGGACGAAGTGCTAGCTCCCCTCTCAATTCCGTATTGCGTCTCCAGAACATGTTTCACTTCACTACACGTGTATCCCAATTCCTCTACTAACCTCCGAATTATGGTTTCATAATCATTAAGAACTGACATAGCTGAATGTGATTCCAGCCAGACACTCTCTCATGAAGTTTTAATTGTGTGATCAACTCCAAAAGTAACTTTTCCTCCTTCCTAGACTCGCAAAAGCCATTGGAAGAGCAGACCAAggttcctcctctctgtccttctctaccaatgggttttgagaaggatgtGACTGGAGTtgatttccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933152 lncRNA upstream 58682 36348843 ~ 36350560 (+) True G1690143
TU1933143 lncRNA upstream 63212 36344291 ~ 36346030 (+) True G1690139
TU1933137 lncRNA upstream 74306 36334117 ~ 36334936 (+) True G1690134
TU1933102 lncRNA upstream 123870 36285133 ~ 36285372 (+) True G1690106
TU1933094 lncRNA upstream 134115 36274888 ~ 36275127 (+) True G1690098
TU1933171 lncRNA downstream 56371 36468873 ~ 36564830 (+) True LOC110499435
TU1933239 lncRNA downstream 117494 36529996 ~ 36534868 (+) True G1690222
TU1933249 lncRNA downstream 144098 36556600 ~ 36557674 (+) False G1690231
TU1933248 lncRNA downstream 144466 36556968 ~ 36557674 (+) True G1690231
TU1933250 lncRNA downstream 147057 36559559 ~ 36560687 (+) True G1690232
XM_021576572.2 mRNA upstream 161730 36207378 ~ 36247512 (+) True LOC110499432
XM_021576571.2 mRNA upstream 229641 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 238343 36161203 ~ 36170899 (+) True LOC110499428
XM_021576566.2 mRNA upstream 251460 36125765 ~ 36157782 (+) False LOC110499426
XR_005038403.1 mRNA downstream 11244 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 24703 36437205 ~ 36540905 (+) True LOC110499434
XM_036956295.1 mRNA downstream 141377 36553879 ~ 36564830 (+) False LOC110499435
XM_036955562.1 mRNA downstream 166224 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 283273 36695775 ~ 36809459 (+) False LOC110499541
TU1933112 other upstream 96544 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 96544 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 133299 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 144261 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 283852 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 465549 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 1129418 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 1238124 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 1392041 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1810003 38222505 ~ 38222735 (+) True G1691990

Expression Profile