RNA id: TU1933658


Basic Information

Item Value
RNA id TU1933658
length 217
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1690589
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36756921 ~ 36757137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacatacaggatcTAGTtcaagttgaaaacagcagaagtAATGACATAGACAAAtaagaggtcaaatgttttctttaCCAGGAAGAAAAATAATCAGTTTACCTCcaatcccctcttccctctcccctctctaattttccctctcttctctcttcactctcctctcccatctctccctctctcctctcctctccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933649 lncRNA upstream 15888 36740834 ~ 36741033 (+) True G1690580
TU1933645 lncRNA upstream 20385 36735218 ~ 36736536 (+) True G1690576
TU1933643 lncRNA upstream 25666 36731033 ~ 36731255 (+) True G1690574
TU1933642 lncRNA upstream 26042 36730640 ~ 36730879 (+) True G1690573
TU1933634 lncRNA upstream 46325 36710374 ~ 36710596 (+) True G1690565
TU1933660 lncRNA downstream 4197 36761334 ~ 36761618 (+) True G1690591
TU1933662 lncRNA downstream 6013 36763150 ~ 36763362 (+) True G1690593
TU1933683 lncRNA downstream 37080 36794217 ~ 36794635 (+) True G1690614
TU1933684 lncRNA downstream 38805 36795942 ~ 36796369 (+) True G1690615
TU1933598 lncRNA downstream 50528 36807665 ~ 36808472 (+) False LOC110499541
XM_036955562.1 mRNA upstream 172831 36578726 ~ 36584090 (+) False LOC118942015
XM_036956295.1 mRNA upstream 192091 36553879 ~ 36564830 (+) False LOC110499435
XM_036956294.1 mRNA upstream 216016 36437205 ~ 36540905 (+) True LOC110499434
XR_005038403.1 mRNA upstream 333060 36423746 ~ 36423861 (+) True LOC118942466
XM_021576572.2 mRNA upstream 509409 36207378 ~ 36247512 (+) True LOC110499432
XM_021576580.2 mRNA downstream 90166 36847303 ~ 36849071 (+) True LOC110499437
XR_005038405.1 mRNA downstream 146693 36903830 ~ 36903945 (+) True LOC118942468
XR_005038001.1 mRNA downstream 149513 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA downstream 149974 36907111 ~ 36909570 (+) True LOC118942068
XR_002469960.2 mRNA downstream 157187 36914324 ~ 36916187 (+) True LOC110499440
TU1933112 other upstream 444223 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 444223 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 480978 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 491940 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 631531 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 120914 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 784783 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 893489 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 1047406 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1465368 38222505 ~ 38222735 (+) True G1691990

Expression Profile