RNA id: TU1933662


Basic Information

Item Value
RNA id TU1933662
length 213
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1690593
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36763150 ~ 36763362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTACCATAAACTTACCATAACCCTACTATAACCTTACCATAAACTTACCATAACCCTACTATAACCCTACCATAACCCTCCCATAACCTTACCAtaaccttaccataacccttaccataacctttCCATAACCCTACCATAACCTTACCAtaaccttaccataaccctaccaTAGCCCTACCATAAACTTACCATAACCCTACTATAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933660 lncRNA upstream 1532 36761334 ~ 36761618 (+) True G1690591
TU1933658 lncRNA upstream 6013 36756921 ~ 36757137 (+) True G1690589
TU1933649 lncRNA upstream 22117 36740834 ~ 36741033 (+) True G1690580
TU1933645 lncRNA upstream 26614 36735218 ~ 36736536 (+) True G1690576
TU1933643 lncRNA upstream 31895 36731033 ~ 36731255 (+) True G1690574
TU1933683 lncRNA downstream 30855 36794217 ~ 36794635 (+) True G1690614
TU1933684 lncRNA downstream 32580 36795942 ~ 36796369 (+) True G1690615
TU1933598 lncRNA downstream 44303 36807665 ~ 36808472 (+) False LOC110499541
TU1933599 lncRNA downstream 44384 36807746 ~ 36809387 (+) True LOC110499541
TU1933597 lncRNA downstream 48603 36811965 ~ 36813583 (+) True G1690531
XM_036955562.1 mRNA upstream 179060 36578726 ~ 36584090 (+) False LOC118942015
XM_036956295.1 mRNA upstream 198320 36553879 ~ 36564830 (+) False LOC110499435
XM_036956294.1 mRNA upstream 222245 36437205 ~ 36540905 (+) True LOC110499434
XR_005038403.1 mRNA upstream 339289 36423746 ~ 36423861 (+) True LOC118942466
XM_021576572.2 mRNA upstream 515638 36207378 ~ 36247512 (+) True LOC110499432
XM_021576580.2 mRNA downstream 83941 36847303 ~ 36849071 (+) True LOC110499437
XR_005038405.1 mRNA downstream 140468 36903830 ~ 36903945 (+) True LOC118942468
XR_005038001.1 mRNA downstream 143288 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA downstream 143749 36907111 ~ 36909570 (+) True LOC118942068
XR_002469960.2 mRNA downstream 150962 36914324 ~ 36916187 (+) True LOC110499440
TU1933112 other upstream 450452 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 450452 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 487207 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 498169 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 637760 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 114689 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 778558 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 887264 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 1041181 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1459143 38222505 ~ 38222735 (+) True G1691990

Expression Profile