RNA id: TU1933834


Basic Information

Item Value
RNA id TU1933834
length 208
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G1690747
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36858779 ~ 36860426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttaacatcctggctccaactaactaattatttaacatcctggctccaactaactaattttttaacATCctgactccaactaactaattatttaacatcctggctccaactaactaattatttaacatcctggctccaactaactaattatttaacatcctggctccaactaactaattttttaacatgctgactccaactaactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933597 lncRNA upstream 45196 36811965 ~ 36813583 (+) True G1690531
TU1933599 lncRNA upstream 49392 36807746 ~ 36809387 (+) True LOC110499541
TU1933598 lncRNA upstream 50307 36807665 ~ 36808472 (+) False LOC110499541
TU1933684 lncRNA upstream 62410 36795942 ~ 36796369 (+) True G1690615
TU1933683 lncRNA upstream 64144 36794217 ~ 36794635 (+) True G1690614
TU1933848 lncRNA downstream 23570 36883996 ~ 36884998 (+) True G1690757
TU1933872 lncRNA downstream 46510 36906936 ~ 36916416 (+) False G1690772
TU1933871 lncRNA downstream 47983 36908409 ~ 36916416 (+) True G1690772
TU1933905 lncRNA downstream 95422 36955848 ~ 36957193 (+) True G1690801
TU1933915 lncRNA downstream 113267 36973693 ~ 36973911 (+) True G1690810
XM_021576580.2 mRNA upstream 9708 36847303 ~ 36849071 (+) True LOC110499437
XM_036956296.1 mRNA upstream 49320 36695775 ~ 36809459 (+) False LOC110499541
XM_036955562.1 mRNA upstream 274689 36578726 ~ 36584090 (+) False LOC118942015
XM_036956295.1 mRNA upstream 293949 36553879 ~ 36564830 (+) False LOC110499435
XM_036956294.1 mRNA upstream 317874 36437205 ~ 36540905 (+) True LOC110499434
XR_005038405.1 mRNA downstream 43404 36903830 ~ 36903945 (+) True LOC118942468
XR_005038001.1 mRNA downstream 46224 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA downstream 46685 36907111 ~ 36909570 (+) True LOC118942068
XR_002469960.2 mRNA downstream 53898 36914324 ~ 36916187 (+) True LOC110499440
XR_005038404.1 mRNA downstream 58110 36918536 ~ 36918651 (+) True LOC118942467
TU1933112 other upstream 546081 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 546081 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 582836 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 593798 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 733389 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 17625 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 681494 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 790200 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 944117 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1362079 38222505 ~ 38222735 (+) True G1691990

Expression Profile