RNA id: TU1933915


Basic Information

Item Value
RNA id TU1933915
length 219
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1690810
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36973693 ~ 36973911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TctcagcctgatgacctagaggctggagagggagtcTACCTGACAGGAACACTGTTTTATCGGGTCTCAGCCTGATGATTGGACTTCAACAGCGCAGCTCTACTCCAAAGTAGCTACTCGCTTTAAACGTCGATCACACTGCATCACAGGAAACAAAACAGGTTAATAACTGCTGTGATGCTAGTAATTACCTTGAtacggagagaggagagttaaTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933905 lncRNA upstream 16500 36955848 ~ 36957193 (+) True G1690801
TU1933872 lncRNA upstream 57277 36906936 ~ 36916416 (+) False G1690772
TU1933871 lncRNA upstream 57277 36908409 ~ 36916416 (+) True G1690772
TU1933848 lncRNA upstream 88695 36883996 ~ 36884998 (+) True G1690757
TU1933834 lncRNA upstream 113267 36858779 ~ 36860426 (+) True G1690747
TU1933909 lncRNA downstream 12356 36986267 ~ 36986774 (+) True G1690804
TU1933910 lncRNA downstream 13164 36987075 ~ 36987231 (+) True G1690805
TU1934051 lncRNA downstream 68325 37042236 ~ 37042577 (+) True G1690931
TU1934058 lncRNA downstream 76388 37050299 ~ 37050528 (+) True G1690938
TU1934064 lncRNA downstream 79866 37053777 ~ 37055465 (+) True G1690939
XR_005038404.1 mRNA upstream 55042 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 57506 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 64123 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA upstream 64123 36907111 ~ 36909570 (+) True LOC118942068
XR_005038405.1 mRNA upstream 69748 36903830 ~ 36903945 (+) True LOC118942468
XM_021576585.2 mRNA downstream 1102062 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 1109984 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 1109984 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 1109985 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 1109985 38083896 ~ 38203970 (+) True LOC110499447
TU1933843 other upstream 92955 36878051 ~ 36880738 (+) True G1690753
TU1933112 other upstream 660995 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 660995 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 697750 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 708712 36264660 ~ 36264981 (+) False G1690092
TU1934277 other downstream 568009 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 676715 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 830632 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1248594 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 1254104 38228015 ~ 38228551 (+) True G1691992

Expression Profile