RNA id: TU1934268


Basic Information

Item Value
RNA id TU1934268
length 208
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1691133
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 37532346 ~ 37532553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATATTGGAGTAACAATGTAATAGcgtgatgtactgttttatgtaCTGGTATAggttggtgttgggttttgttgCAAAGGAACTGTATGGATACCAGGAAGAGTAATTGGGATTCTAATCATTTCCAAAtaaacacacgcacagacacgcacacacacacacacagacatgcacgcacacacacacgcacacacacacgcacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1934259 lncRNA upstream 15283 37516807 ~ 37517063 (+) True G1691124
TU1934234 lncRNA upstream 55145 37472360 ~ 37477201 (+) True G1691100
TU1934232 lncRNA upstream 56279 37472360 ~ 37476067 (+) False G1691100
TU1934231 lncRNA upstream 58668 37470058 ~ 37473678 (+) True G1691099
TU1934159 lncRNA upstream 245222 37286894 ~ 37287124 (+) True G1691033
TU1934269 lncRNA downstream 372 37532925 ~ 37533144 (+) True G1691134
TU1934276 lncRNA downstream 8268 37540821 ~ 37541156 (+) True G1691141
TU1934278 lncRNA downstream 10998 37543551 ~ 37543761 (+) True G1691143
TU1934287 lncRNA downstream 26368 37558921 ~ 37559202 (+) True G1691150
TU1934288 lncRNA downstream 26978 37559531 ~ 37559799 (+) True G1691151
XM_021576583.2 mRNA upstream 546786 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 613695 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 616159 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 622776 36906650 ~ 36909570 (+) False LOC118942068
XM_021576585.2 mRNA downstream 543420 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 551342 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 551342 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 551343 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 551343 38083896 ~ 38203970 (+) True LOC110499447
TU1933843 other upstream 651608 36878051 ~ 36880738 (+) True G1690753
TU1933112 other upstream 1219648 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 1219648 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 1256403 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 1267365 36264660 ~ 36264981 (+) False G1690092
TU1934277 other downstream 9367 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 118073 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 271990 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 689952 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 695462 38228015 ~ 38228551 (+) True G1691992

Expression Profile