RNA id: TU1935108


Basic Information

Item Value
RNA id TU1935108
length 275
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1691908
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38074384 ~ 38074658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctaaatgttccattgccatactggctggcaacgttcttatcccttgcttgctagctatccAACTACGGGtaatttacagtcacgtcaaaaagtgcagccagaaaaACAACAAAGTAGCGCATTTGttaaagctgttttctagtgCCATTTATTTGGATTCATCCacaacaatgagctaatgaggtgtgattttgcctggcatagaaaaCAGGCTCACTAGACAGGACACTTGTCCAGAGGAGCCAGCCAACAACAAGCTAACGCAATAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935095 lncRNA upstream 23455 38049859 ~ 38050929 (+) True G1691896
TU1935090 lncRNA upstream 35343 38038697 ~ 38039041 (+) True G1691891
TU1935081 lncRNA upstream 47228 38026775 ~ 38027156 (+) True G1691882
TU1935070 lncRNA upstream 55685 38017808 ~ 38018699 (+) True G1691871
TU1935036 lncRNA upstream 88221 37985839 ~ 37986163 (+) True G1691840
TU1935158 lncRNA downstream 67201 38141859 ~ 38142115 (+) True G1691954
TU1935167 lncRNA downstream 80429 38155087 ~ 38155796 (+) True G1691963
TU1935173 lncRNA downstream 100912 38175570 ~ 38175814 (+) True G1691969
TU1935196 lncRNA downstream 142233 38216891 ~ 38218610 (+) False G1691989
TU1935197 lncRNA downstream 142233 38216891 ~ 38218610 (+) False G1691989
XM_021576583.2 mRNA upstream 1088824 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 1155733 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 1158197 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 1164814 36906650 ~ 36909570 (+) False LOC118942068
XM_021576585.2 mRNA downstream 1315 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 9237 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 9237 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 9238 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 9238 38083896 ~ 38203970 (+) True LOC110499447
TU1934415 other upstream 265323 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 420320 37650626 ~ 37654064 (+) True G1691189
TU1934277 other upstream 531119 37541920 ~ 37543265 (+) True G1691142
TU1933843 other upstream 1193646 36878051 ~ 36880738 (+) True G1690753
TU1933113 other upstream 1761686 36304939 ~ 36312698 (+) True G1690116
TU1935199 other downstream 147847 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 153357 38228015 ~ 38228551 (+) True G1691992
TU1935683 other downstream 493611 38568269 ~ 38569446 (+) True G1692406
TU1935894 other downstream 636293 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 765276 38839934 ~ 38840271 (+) True G1692702

Expression Profile