RNA id: trnak-cuu-141


Basic Information

Item Value
RNA id trnak-cuu-141
length 73
RNA type mRNA
GC content 0.62
exon number 1
gene id trnak-cuu-141
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2524450 ~ 2524522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gcccggctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccccacgttgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1946881 lncRNA upstream 20661 2503461 ~ 2503789 (+) True G1701167
TU1946879 lncRNA upstream 27425 2496392 ~ 2497025 (+) True G1701165
TU1946877 lncRNA upstream 31932 2490955 ~ 2492518 (+) True G1701163
TU1946844 lncRNA upstream 68588 2455662 ~ 2455862 (+) True G1701137
TU1946843 lncRNA upstream 70048 2454081 ~ 2454402 (+) True G1701136
TU1946866 lncRNA downstream 9257 2533779 ~ 2539639 (+) True LOC110499736
TU1946887 lncRNA downstream 10849 2535371 ~ 2535876 (+) True G1701173
TU1946868 lncRNA downstream 53411 2577933 ~ 2578978 (+) True G1701154
TU1946898 lncRNA downstream 59239 2583761 ~ 2583988 (+) True G1701184
TU1946900 lncRNA downstream 61659 2586181 ~ 2586423 (+) True G1701186
trnak-cuu-140 mRNA upstream 1266 2523112 ~ 2523184 (+) True trnak-cuu-140
trnak-cuu-139 mRNA upstream 2574 2521804 ~ 2521876 (+) True trnak-cuu-139
trnak-cuu-138 mRNA upstream 3126 2521252 ~ 2521324 (+) True trnak-cuu-138
XM_036956609.1 mRNA upstream 10106 2511193 ~ 2514344 (+) True LOC110499733
XR_005038454.1 mRNA upstream 76872 2445606 ~ 2447578 (+) False LOC110490688
trnak-cuu-142 mRNA downstream 1634 2526156 ~ 2526228 (+) True trnak-cuu-142
trnak-cuu-143 mRNA downstream 2406 2526928 ~ 2527000 (+) True trnak-cuu-143
trnak-cuu-144 mRNA downstream 3115 2527637 ~ 2527709 (+) True trnak-cuu-144
trnak-cuu-145 mRNA downstream 3708 2528230 ~ 2528302 (+) True trnak-cuu-145
trnak-cuu-146 mRNA downstream 4351 2528873 ~ 2528945 (+) True trnak-cuu-146
TU1945284 other upstream 654896 1867694 ~ 1869554 (+) False G1699934
TU1945285 other upstream 654896 1867694 ~ 1869554 (+) False G1699934
TU1945286 other upstream 654896 1867694 ~ 1869554 (+) True G1699934
TU1945169 other upstream 755173 1758469 ~ 1769277 (+) False LOC110499743
TU1945155 other upstream 855230 1665756 ~ 1669220 (+) True LOC110500915
TU1946903 other downstream 114818 2639340 ~ 2653619 (+) False LOC110519348
TU1947013 other downstream 320182 2844704 ~ 2849603 (+) False G1701265
TU1947414 other downstream 1249517 3774039 ~ 3776261 (+) True G1701596
TU1947490 other downstream 1408265 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 1408265 3932787 ~ 3936037 (+) False G1701654