RNA id: XM_021578311.2


Basic Information

Item Value
RNA id XM_021578311.2
length 3443
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110500778
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58508576 ~ 58512400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCGAGAGGAAGCGGTGAAGTGAGATGGTCGACTCCGCCTAAAATCTGTCTTGGCGAAAAGCGTTAAGCAGAGGGCGGAGTTTTTGTACGGGCGGCAATGAGAGAGCGGCGAATATGGTAAGTACTATTTTGATATGAGAAGCTTATCGTTTAATCAAATATAAGTTTCATACTGATTAGGTTGCTACGAGTGTACTGATGTAGCCTAAGTGTAATGCACGTAACATTCCGGCAACTTTGTGAAAAACATTTTTATATGGGAGTTGTTGTTCACAggcgtatctgccctctcattggctagaatgttcCCACCTGATCGCGCATCCTCCCGCCTGCTTTTAGCCTTTGCGGACATGTATTTCCATCGTTAGAGCGGTCAGTCAaccatcttgtcaatataattgaTCCTCTTTGCCTTACATTCATTGTTTGTAAGACGCTGGGGAAGAAGAGCGCGATACACATTTCATAGCGCAAATGTAAAACATTCGCCAATAGACATTTAGAAGGTTTTCTATAATAGATCATGTCCAGCTGATATATCCAGATGCTGGGTAAGCGAGGAAGATTCAGACGGAGTTACTCTCTTCCTGCTATATTGTAGCCAATCACATTGCAACATAGTAGCCAGTAATATTATAATCAGACTAGCAGTAAGGTTATTGTAGCAACATGAAGCCTCAGTCAAAAACTAACACAGGGATCAAAAGGGAGACTTCAATGTCAGCCCAAGCTCGCCCCTCGAAAACCGCTGGAGAGGGTGAGGTATCGCTCTCTTTCCAGGACGAACTggcggcgacgatccacggtgcGTTCGAAGTGGCTGTGGAAATTGCCGTATTAGAAGTCACTAAACTGGTAGGTCAAGCGCTTGGGGATGTCCGCGATCAGATGCACGAAACCCTACGGGAAAACAAGTCTCTTAAACAACGCTTGCAAACAACCGAGCAAGAGTTGAATGCTGCGCGTCAATGTGTGGAAACAACGAGAGGTGTAAGTCCGCAGGGACAGTTCTCGACAAGTCCTCTCCACAACAACAACTTAGCAAAGACTCAAAAGCAGTCAAAGGACAACGAATTAAATATAAAGTCCTCATATTCATTGGACGAATATGGATATGAAATTGTGGAGGCAGAGATCAGTAGTGAACGACAGAAAGACCATGGGTCTTTCAGTGAAATCAGCGAGGATGGTCGGGTGTGTTCCCAAGACCTACACCCAGCTACAAGAGGACAGTCTATCCCTCATCATGACCTGCTTAAAGTCGGGGAAGAGGCCTCCAGTTTGTGTATGGACCACAAGGCAAGTGTAGAAAGCATCAGTCATAGTGGTCTAGAAACAACATTTGGAGATAATGACCCATCACCACTTCACGTAGTGGTCCAGAGCCTTGAGACGGAGCAGgttagagtgaaggaggagaacgGTTCTGGttccggctctggttctggttctagtTTTGACTCTGTGGTAAAAGAAGACTTTGGTCCTGATAGTCTGTCTCTGGTTCAGTCCAAGATGTTAGAGGAGTGGAAACCGGACCCTTTGGACTTACAGATctctgactctctgcttcctggaACCAGCCATAGTCTGTctcaCCCTCATATGGTCAACACAGATGTTCCACAACTGACTGCCCCAACAGCCAGTGGCCTTCCAGCCTTCTCCTCCCAGTTCCCCAACAACCTCTTCCAACCAAGAGAGGCAGCAGCTCCCATCATCCCTGTTGCCCCACCTCAGATCTATGGAGTCCAGATCAGAACCAACCCTAATcccaccatcccccaccccaaccctaatcccaccatcccccaccccaGCCACATCTGCAAACTCTGTGGCCAGGGCTTCCACCAGCCCAGCGAGCTCCGTAGACACCACACCCAGGCCCACCCCAAGCGTCAGGTCTTCCCCCCTGGCCAGAGCCCTTACCACTGCAGCGAGTGTGACCGGGATTTCAACCGTCTGGAGAACCTGAAGACTCACCTGAGAATCCACACTGGAGAGAGACCTTATACCTGCTCGGTGTGCTCCATGCGCTTTCGCCACTCGGGGGCGCTCACCAGGCATTTCCGCatacacactggggagaagccGTACGTCTGCGGTCAGTGCGGAAAGACATTCCGGAACTGTGGGGGACTCCGGTTCCACCAGCGCTCCCATAGTAGACAGGGACAGTGCTAGTGTAGCgatttaaggggggggggggcagctatgTGGATACAGCAGGGCAAGCTCAGTCACTACCTCCTTTGCCATAATGGTCCAGAACCCTTGGCACAGGCTGAAAGTCTTTACCAAACCCTCCCAGATTTCAAGATTAAAACATATTAAACTTGGCCAGGCcataaaggggaaatctgcagtcACTACTAATGTTTATTGATTTGTCCGTTAATAaggatatgtacccattgattcttgaagaatataactttttgaacatAGTTACCATTTTCGTACACCTCAAAATATGATCTTGTTTTACTccgatgtttgtaaacaaagttaATGTAAACAAACCGTGACTACCATGGAAACATGGTTAAACCTTTAGTTTTGATATCATGGACCACCTGCATCCACagctctatgaatttgagagtggtttctTTTCTCCAGCCCCGTCCCTCAGCTCTTAACGAACAGTGGCGGGGAgtttgctttgttattgttttaactGCTGAATGCTGCTTTAACACCAACCAGGTCTGTCCTTTCTTTTCCCCCCTCTGTTGTTTTCTACAAATGTCTCACACAATGTGTGACTCATTTTGTGACTAAATTGCTCACTGTCATGGCTTCCTAAAACCCACTTCATGGAAGAACCTCATCGCAGTAAGGCAGCCACAGTGGTCCGGTAAATGGTGTCTGGCTCTATAGGTTCTCCCTGCTGGgctggggaacacacacacacacacacacacacatagatgttAACTTACTTACGATACACTACCTGATATAATCCCAGTGTTTCTGTTATATGAATGGGGTTGAAGAAACCCCCTGCACAgatatgcacttacagccagccCCTCATTGGGTGGTCACTACACCACATGCCATGCTGAAATAGAAAGACCTGATGCTGGTGTAAATATTTCCAATTGAATTGCCATGATCTCAGTGGTTCCTGATGATATACTAGTGTATTGCCTTAGTTAAACGCTATCAACTTAAAAACAAAAAGAGTAGTTCCTTATCTCTATCACAACTACCCTTCTCAGTTGTAATGGCTCCTTTTGTGGCATCGTTTCTCTagataacctccctgtatgtctTTTTGCAGTATCTTTTCCATGTTGCCTAATTGGGAGTTCTCGTTTCCTATTTGGTAGTGTCCCCAACACCCGCCCCTCCATCACTGCCGATTGACACATATCCGTCACCACCTGTCCCCTCCCTCCTCGTCTCATTaaaactcctctcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2012299 lncRNA downstream 29995 58477903 ~ 58478581 (-) True G1757421
TU2012268 lncRNA downstream 83354 58424905 ~ 58425222 (-) True G1757391
TU2012263 lncRNA downstream 92421 58415935 ~ 58416155 (-) True G1757386
TU2012255 lncRNA downstream 96892 58409953 ~ 58411684 (-) True G1757378
TU2012138 lncRNA downstream 116050 58391692 ~ 58392526 (-) True G1757279
TU2012321 lncRNA upstream 17338 58529738 ~ 58529956 (-) True G1757440
TU2012322 lncRNA upstream 17654 58530054 ~ 58530286 (-) True G1757441
TU2012326 lncRNA upstream 26660 58539060 ~ 58545895 (-) True G1757445
TU2012327 lncRNA upstream 27140 58539540 ~ 58546221 (-) True G1757446
TU2012335 lncRNA upstream 42693 58555093 ~ 58555347 (-) True G1757454
XM_021578312.2 mRNA downstream 96 58499259 ~ 58508480 (-) False LOC110500779
XM_036958287.1 mRNA downstream 96 58499259 ~ 58508480 (-) False LOC110500779
XM_021578313.2 mRNA downstream 96 58499859 ~ 58508480 (-) True LOC110500779
XM_021578317.2 mRNA downstream 64630 58441167 ~ 58443946 (-) True LOC110500784
XM_036958285.1 mRNA downstream 130101 58372150 ~ 58378475 (-) True LOC118942958
XM_036958295.1 mRNA upstream 448861 58961261 ~ 59280662 (-) True LOC110500776
XM_021578306.2 mRNA upstream 769769 59282169 ~ 59284125 (-) True LOC110500775
XM_036958297.1 mRNA upstream 862996 59375396 ~ 59440540 (-) False LOC110500772
XM_036958298.1 mRNA upstream 862996 59375396 ~ 59440544 (-) True LOC110500772
XM_021578303.2 mRNA upstream 942315 59454715 ~ 59459893 (-) False dctn6
TU2011956 other downstream 465519 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 599442 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 605983 57902086 ~ 57902593 (-) True G1757073
TU2009892 other downstream 2101258 56406582 ~ 56407318 (-) True G1755322
TU2009879 other downstream 2118010 56390057 ~ 56390566 (-) True G1755310
TU2012593 other upstream 287774 58800174 ~ 58805825 (-) True G1757692
TU2013080 other upstream 680032 59192432 ~ 59195490 (-) True G1758095
TU2014036 other upstream 1511367 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 1610142 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 1676010 60188410 ~ 60225587 (-) True G1758915

Expression Profile