RNA id: TU2013078



Basic Information


Item Value
RNA id TU2013078
length 351
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1758095
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59192432 ~ 59195490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctttctctcactctatcactctctctctttctctatcactctctctttctctcactatataactctctctttctctcactctctctctctttctctcactctagcactctctctcactctttctctctctctcgctctttctatatcactctctttctctctatcactctttCTCTATATcaccctttctctcactctattactctctctctttctctatccctctctctttctctcactatcactctctctctctctttctctctctttttctatcactctctctctctctctctttctctctctttttcttctgtcactctctttattctctctctctttgtttgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2013067 lncRNA downstream 13687 59172862 ~ 59178745 (-) True G1758087
TU2013070 lncRNA downstream 14457 59173634 ~ 59177975 (-) True G1758088
TU2013069 lncRNA downstream 14703 59173634 ~ 59177729 (-) False G1758088
TU2013071 lncRNA downstream 17435 59174415 ~ 59174997 (-) True G1758089
TU2013061 lncRNA downstream 28150 59163795 ~ 59164282 (-) True G1758086
TU2013082 lncRNA upstream 2722 59195814 ~ 59196267 (-) True G1758096
TU2013085 lncRNA upstream 9953 59203045 ~ 59203926 (-) True G1758099
TU2013091 lncRNA upstream 22993 59216085 ~ 59216586 (-) True G1758105
TU2013097 lncRNA upstream 34859 59227951 ~ 59228345 (-) True G1758111
TU2013109 lncRNA upstream 71077 59264169 ~ 59264513 (-) True G1758123
XM_021578311.2 mRNA downstream 680032 58508576 ~ 58512400 (-) True LOC110500778
XM_021578310.2 mRNA downstream 680040 58508576 ~ 58512392 (-) False LOC110500778
XM_021578312.2 mRNA downstream 683952 58499259 ~ 58508480 (-) False LOC110500779
XM_021578306.2 mRNA upstream 89077 59282169 ~ 59284125 (-) True LOC110500775
XM_036958297.1 mRNA upstream 182304 59375396 ~ 59440540 (-) False LOC110500772
XM_036958298.1 mRNA upstream 182304 59375396 ~ 59440544 (-) True LOC110500772
XM_021578303.2 mRNA upstream 261623 59454715 ~ 59459893 (-) False dctn6
XM_021578302.2 mRNA upstream 261623 59454715 ~ 59460683 (-) True dctn6
TU2012593 other downstream 386607 58800174 ~ 58805825 (-) True G1757692
TU2011956 other downstream 1149375 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 1283298 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 1289839 57902086 ~ 57902593 (-) True G1757073
TU2009892 other downstream 2785114 56406582 ~ 56407318 (-) True G1755322
TU2014036 other upstream 830675 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 929450 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 995318 60188410 ~ 60225587 (-) True G1758915
TU2014196 other upstream 1165738 60358830 ~ 60359352 (-) False LOC118942962
TU2014199 other upstream 1166333 60359425 ~ 60369982 (-) False LOC118942962

Expression Profile