RNA id: XM_036958568.1


Basic Information

Item Value
RNA id XM_036958568.1
length 5926
RNA type mRNA
GC content 0.48
exon number 12
gene id slc39a10
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7103577 ~ 7168382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtacaaaacattaggaacacctgctctttccatgacatcaactgaccagCTCAACAGTTGGTATTTCTGAAGAACTGGAAAAGGCCCTATCACGTCAGGATTGGGGCCAAGGCGGAGCAGTATTACTACATTGAATTGAAGAACGCACCCTTGGATATGGGGTGTCATAGCGGGGAGACGATGCGGGTCCACACTCACACCAAGTTCTGCTTCCTATGTGTGCTCACCTTCCTGTTCCACCAGTGCAGCCACTGCCACGGCGACAGCCAGCACCATCACCACGGCCATCACCAAGGCGACCATAGCGGCGCTGGCGACCATGATGGTCATGAACACGCCCACAGCGACCTGCAGATCTCCCAGGCTCCTTACGTGGGCGGAGGAGGGTCTGGTGGGGAAATAGATGCGCAGAACAAGGGTCCTGGCGAGGTGCTAGAGCTGGAGCAGCGCTTCTACATCCACCAACTGTTCCGGCGTTACGGCCAGCGCGGCCAGCTGGACTTCCGTGGCTTCCAGAGCCTGCTGCTCAGCCTGGGTCTGGGGAAGGTGAAGGTGGTGGGCTTGGAGCATGAGGAGCTGGGCCACGATCACGTTGCCCACCTGGACCTGCTGGAGGTCCAGGAGGGGCTCCACTCACACTCGCCCACCCACGAAGAGCCAGGGCATGGCCATGGGCATAGACACCAGCATACACGGGGGAGGCCCCACGTACACTACCACCCACACACAGATCCAGGGCCAACTCATTCCCCCTGCAACCAACTGGCGACCGGTGCCAGTCCCACTGTAGATGATGGTCCATTGGAGGATCACGACCACAAACATGACCACGGCCCAGTAAAAGACAGTGATGATCATAAACCAAATCATGACCACGAACAAGACAAAGAGCACAAACGCAAAGAGAGCCAACAGCTCAACCATGAAGACCACAGCAACAAGACTCAGCCTCATCATGATCATGAACACTATCATGATCATGACCTCAAATCCCACACACACCCCCATCACTCACAAAACAACACGGACAGTCCTCAAGCACATCAAGAGCAGCCATCCACAGCCCCGGCACAGGCCCGCCAGGAGCAGCAACCAGGGGCCGAGGCTTCAGAGGTCCCTATTTCCAAGCCCTCTGCCCCACTTACCCTACCTCCAGAATCCAAGCCCAAGAGGCCAAGGAAACCCAAAGGCCAGTGGGCACGAAACCAAGACCACCATAACCACAGTCAGGAACATGACCACGTGCATGGTCACAGTCTTAGTTATGCGCCTAGGGGGAAGAGGGCGGCAGGTGAGCCCCACTTGAGCCCCATGTTACCGGTGCCAGCCCTGCCCAGGCATCAAGAGGACGTGGTTCATCAGCATGAGGAGTGTCTGAATCTGACCCAGCTCCTCAACTACTATGGCCTGAGTCCAGACTCCCGCATCTCGCCCAGCCAGTTCACCTACCTGTGCCCGGCCCTGCTCTACCAGATTGACAGCCGCGTCTGCATCCGCCACTATCACCAGGTGGACTTGGGGCAGGCCGCCCTGGAGCCAGCCAACTCCGtgtgggtCTGGATGTGGGGCTTTGTCTCCATCACCATTATCAGCCTGCTGTCCCTACTGGGTGTAATACTGGTGCCCATCCTCAACCAGGGCTGCTTCAAGTTCCTGCTCACATTCCTGGTTGCCCTGGCTGTGGGCACGCTCAGCGGAGACGCCCTGCTCCACCTGCTGCCACATGCTCAAGGGGAGCACGACCACAGCCACGGTGAGTCAGGAAACAAGAGCAACACTAAAGAGGTGGACATGCTCACTGCCTTTGACGGGGTCTGGAAGGGCCTGACAGCGCTGGCTGGAATCTACTTCCTCTTTATTATTGAGCACTGCCTCGGCATGTTCAAACACTACAAAGACGCAGGGGGAACCTTCTGTCGTAGGaagaagaggggtgaggaggcCAAGATTGGCAGGAAGCTGTCCGATCACAAGCTGAATCGACGCTCGGACGCAGAGTGGCTTCACCTCAAGCCTCtcacagaggGTCTGGACAGCACGGCCATTTCCTGCGACAACGGCCACAATGACACCCAGCTTACAGAGCTGCAGCCACCTGACTCGCCCAGCAACAAGACGCCACTGGCCCCTGCAGACTTGCTTACCAAGGAGAATGGCCGTCGGCCCAAGAAACACGGGCACAACCACGGCGGGCATTCTCACGGAGGTGGGCATGGGCACTCACATGGCAGGAACTGCCACTCGGACCAGGAGATGAAGGACGCGGGCATCGCCAGCATCGCCTGGATGGTAATCATGGGTGATGGCATGCACAACTTCAGCGACGGCCTGGCCATAGGTGCTGCCTTCAGTGCAAATATTACCGGTGGCATCAGTACATCTGTTGCCGTGTTCTGCCATGAATTGCCTCACGAACTGGGTGACTTTGCGGTGCTTCTGAAGGCTGGCATGTCGGTGAAACAGGCCATTGTGTATAACCTACTCTCTGCCCTCATGGCCTACGTGGGCATGATGATCGGCACAGCCGTGGGCCAGTACACACACAACGTCACCAGCTGGATCTTCGCCGTCACCGCTGGCATGTTCCTCTATGTGGCTCTGGTGGACATGtTACCAGAGATGCTCCATGGCGATAGCGAGGAACACAAGCGCTGTCAGCTGGGCCACTTTGTCCTGCAGAACCTTGGCCTGCTCACCGGTTTCTCCATCATGCTGCTCATTGCCATCTTCGAAGACCAGATAGTTTTTGATTTTGGCTTCTAGCGGTGGAGGGTGGGGCCGGTTGGTACGAGGGAAGGCGAATGTGAGGTTGTCGCTACTTGTACTTTTTTGGCCTTTAAAAAGTGCTTTGTTTGTTCTGTGGTGGTCCAGTGTCCTGCATGCATAGTGATCGAGCTCTCATTCATGCTCCCTGTGCCTCTCCATTCCGTAGCTCAAAGCAGTGGCTTATACATATTCCCCCATTCTGTTGCCTTTCTCTGTCCCATTGAGTTATTCCTTTCAGCTCCTAAGTTCTATCCTATGCTCCTTCCCATGTAGCTTAGATGCTGTATTGAAGGTACACCTCAAGGTTACACACTCACCAACAAACACCTCTTTAGTTGATATTGATAAGGCCACCTTCCTTTCGGAGACTAGCTTATGCAAGCAACACTTTGATTACTCTCCCCATTCCTCTGAAACCCATTGTAGCAAATCAAAAGGAATGTCACATTCCAATTGGTCTAAATACATTTGTCGACAAGATAAGTTCACATATCGGCGGCTCGCCTCAGTATCAGCAGGTGTGCTCCACAACCTTTGAGCTTCTCTCTCAGATAGTGGGCAAAGTTCCTCACCCGACTGTGTAAGATGGATAACCTCCTACCCTGGAGATTTCTCCAGATTGCTTCCCACCGGGCCTCCCCTACAGAGAGGAAGCTGTCATGGCCCAGCAGCCCTCTGCTCATCCATCATAACCCTGTGCAGTGTGTCGTCTTATGTCGTTCCCACTCCCTTTATCTGTTATCAACCCTGTGGCTTATCCCATTATCCATGCCTAGTGCACCTATGGTGCCTTCCCATTGCCCCCATCCATCGTAAACTTGTGAAATCTGTCCCGCTGTGTATCAACATTTATTGTCTAAAGCCGTGGCTGTGCCAAGTCCATTGTGGTGGCTTTGCCAATGAACACACTGTAATAGAGTAGCTAGGAGCTAGCTAGTCCGTAGACTCGGAAGTGTTAAAGGAAAGTGGTGCTAAAGCCCAAATTTGTCCCCAGGCATTGCATGAGTCAACAGGTCTGTATTGAAGGTCTTCGCCCTGTTGCTCTGCAAAACAATTGAACCACAGCTTAGCTATGCATTTTGCCAAAAAATGTGAATGCTACTACCCCAACCTTAAAAGAGCGATTGAGTGTCTAATTATAATGTCTCGGTGTTCATTTGCAGCAGTCtccatatttatatattttttggtctTGTTTTTATGGCTAATTTGAGAAGCATTGTGGGTATTGAGGGTACGGTAAAAAAATCAGGTACGACTTTAGGTACTCACTTGGATGTAGGCTCCAGTCCGTTTCATTTCATTATGAGTGTTCAAGACCGATGTTAAATGTAGACTCAGCGACGCACAAAGTAAACAGAATATTAACTCAATTTCCACAACAACTAAGAGTGTTAAAGCATGGGCCTCAAGTTCTCCACTGCTTTGGTCCTGTAGCTACCATGTTATAGTGGTGTAAAGTGCACCCGAGCACATGCTCAGATACTCTGTGTGACTATTGGAGAGCAGTCTAGCATCgcgctcatctcaatatctgcggtACTGATTCATAGCGCTGAGTCGATCTCTGAAATGATATGGGAGAAAAAAAGTTGGATTACCTAGATATATATTAAGAACCAAGAAATATTGCCCAGCTGCTTTTGGAGGACTGATGATAGTCTGTAaacaaacatttgacattttacaaAATGAAACTTTGCATGCCCTAAGTCCTATGTGAATTTAAGATAGAAGAAAATACTATGTCGAAGAAACAGTGTTACTTTGCATTTACTCCATTATTGAGGGCACTAGCTTGTTTTTGTAGCCAAATACATGACCCATGCATTGTGTTGTGgtattttcttatttttaaatGGGTTACTGTAAGTCTTGATTACCCCCATCGCAATCGGGCAAAGTCAGAAGTCAATTAGATTGAGAGCGAATTAAGTATATTAACTTTGCTTATTACATGGGGGTTACACTAGTTACCTTACCAAAATACCCAAGTTAAGACTGTTTTCAGCATCATATAAGCACAGGAACCGTGCAAATCTAAAGAGTGTCACTTGTATTGTTAAACCCTGAGATGTTTGGATACTGTGTTGTGTATCATTTCTCCCAAATCAGTTTAAGAAAGTACTTGTGTCAAATAATACATTTTCCTGTGTCATTTTGAAATTGTCAGAGAACAATCTGGAAAAGAACAAGCATGTCAATGGCCTTTTTATCACTGCTAAAAATATGCTTTGTCTATATATTTGAATATGTTCAAATTAGCACACTTTGCACTTGTGTAATTGATATTCGACTTGTAATCAAACCGTATAACTATAAGGTTATCAGATGTTCCtttgatttgtttatttttattttttatcaatcaTTAGTTGTATATCTTTGGTTAAATGGGTGTATGAGATATGACACCACGCCGACTGTGCCAAAAGTGGCCCATTTGGGTTTTCTTTACCATAATTCTGTGCTTGCCGTCGCCTCCTGACATTCCATTGGCTGTCTGCTGCTCGAGTGCTAAGCTAGCCAGCCTGGCTGCTTCACCTGCTGGATCACATTGAAATGTGCAACCTCCATTTATCCTGTCACTGTGTGACATCCATCGTCTTGTCTTATTGGCTGTGAATCATCGTCAATCACATTAAACTAATGTACTTGATTGGATCGAATCATGCATGAGGCATGAGTGAAATGGAACAGGAAAATGTTTTGGATGTAATTGTTTCTCTGCTTTTGTATagaaaaatgtaaattaaaaagaCTAGtcaaatgttttgtttattttttaaataaaccaATCAACTGTAGCGATGAGGACTTCTTTGGGGCCTGCTGAGCCTACTGGTAGAGCTTTAGTGTTTTAGAACATTAATGTTAATTCATTTTCATAGTCAGTTTTTCAACATGAGAAAACAAATAGAAATATGTTCTTCATGGGCTGAATAGGTGCCTGCAATGTCGCTATATTCTTTTAACAATACATTTTTCATGCAATGGAGATGGTTACAAGTGTCTAGCCACCATTTAGATTACCATGCCCCAAGGAATATCAGAATCTCTTTACTGGACTAGGAGCAGCAAATACAAAATAATATGAAGGTCCATGGTTAATTAATTTGATACATTGTTTACAAAAGGAAAATAAAGTTTGCAAAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2028156 lncRNA downstream 80895 7022472 ~ 7022682 (-) True G1770941
TU2028146 lncRNA downstream 96326 7006871 ~ 7007251 (-) True G1770931
TU2028140 lncRNA downstream 106768 6996565 ~ 6996809 (-) True G1770925
TU2028023 lncRNA downstream 156138 6875219 ~ 6947439 (-) True G1770821
TU2028047 lncRNA downstream 196793 6849660 ~ 6906784 (-) True G1770840
TU2028327 lncRNA upstream 100378 7266420 ~ 7269109 (-) False G1771096
TU2028328 lncRNA upstream 100378 7266420 ~ 7269109 (-) True G1771096
TU2028350 lncRNA upstream 123393 7289435 ~ 7295790 (-) True G1771107
TU2028366 lncRNA upstream 140056 7306098 ~ 7306492 (-) True G1771123
TU2028446 lncRNA upstream 207949 7373991 ~ 7374296 (-) True G1771196
XR_005038962.1 mRNA downstream 248144 6854086 ~ 6855433 (-) True LOC118943629
XM_021578736.2 mRNA downstream 877011 6082380 ~ 6226566 (-) False LOC110501288
XM_021578734.2 mRNA downstream 1061388 6018678 ~ 6042189 (-) True LOC110501287
XR_002470291.2 mRNA downstream 1089931 6009831 ~ 6013646 (-) False LOC110502106
trnas-cga-33 mRNA downstream 1107930 5995566 ~ 5995647 (-) True trnas-cga-33
XM_021578741.2 mRNA upstream 157555 7323597 ~ 7326019 (-) True LOC110501290
LOC110502040 mRNA upstream 173185 7339227 ~ 7346841 (-) True LOC110502040
XM_036958571.1 mRNA upstream 255262 7421304 ~ 7423883 (-) False LOC110501291
XM_036958572.1 mRNA upstream 255262 7421304 ~ 7423889 (-) False LOC110501291
XM_036958573.1 mRNA upstream 255262 7421304 ~ 7423889 (-) False LOC110501291
TU2026785 other downstream 1142762 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 1278270 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 3329568 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 3652239 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 3777234 3325721 ~ 3326343 (-) True G1766126
TU2028322 other upstream 85742 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 296171 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 1458980 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 1571137 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 1571137 8737179 ~ 8743033 (-) True LOC110501325

Expression Profile