RNA id: XM_021578802.2


Basic Information

Item Value
RNA id XM_021578802.2
length 2859
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC110501323
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8624815 ~ 8684792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGCACTTTACGCATTTATTTTCGGATCCACCCCTGTGTAAACGTAATTTGCCTAATGACCGCTTGAGTGGAGCAGGACCGTCTCATTTCAAGCAAGCCATTTTCATCCAAGTTCACGCTCCTTGCCGACTCTCCTCGATTAACTTTGACCTTTTGCAAAAGCAGGCGAGAGAGGACGCAGGAGGCGGGCAAATCTAATTGATAAAAGGccaatatgacagacaaaacagaCCGAATGTGCTAgcctgacgactcaaactgaaCTATTCTGCTGCTCTGTGTTCGCTAAATAGTTTTTTCCTCGTCCGTGGGCGTGGCGTTTGGCCGGAGcgaggagtctgggtagccaggcaacaaATGTCCAGTATTCATGCATCGGATTTGAAACAGCGGCGTGCAGCTCGGTTAACGGGAGGAGAAAACGGACAGTACCTTTCCCGAAAACAATGAAGACGGGCACATTTCCTAGGGTTCCGTTCTATCCTAGAAGACACATGGACTAAAAGAAATAGGGGCACCAGGCGAGGCCCTCTGGCTGTCCTCTCAGCTGAGACCTGACTGCTGATTGGAGCCGGCCTGGTGTTCGtataggtgtgtttgtgtgtgaggagATGAAGTCCAGTATGCGTCAGTGGCGGAGGCTGGTGTTTGTGGGGATGTTGGCATGGGCCCTCCTCTTCCTGGTTCTGCTATCCTACTTCCTAGATGCCCGCGTGGACAACGAGGCCCTGACCTCCGCCGGCTCCTCGCTCTCCCAGCATCCCGACACGCGGCGCTTGTCCTCCATCCAAGCCGCCTCCCACCAGCAGCACCACTCCGTCATGGGCTCCCGACCCGAACCCGCCTACACCACCTTTACCACCATCTACCCagaccctaactctaaccattACCCAGACTCCGAAGCAGAGCCTAGCCCCACTTCCACCACCTCAGAGCCTGGCCTGGAGCTGAGCCAGAGCTCAGACAGCGGTCCCTACGGGACCAGccaggagggggtggggggcagcCGACAGCAGCAGGACTACCTGGACCCCCAGACCCTGGCTGCGTGGTCCTCTTTTGGCACGGAGAACGTGGGTTCCCACTCTGACCAGGTGGTGACCCGCAGCCGTGAGAGAACCGCCTGGACCCCCTCTGATGCTGAGTGGGGGCCCAACCGAACCAAGCGCAGATCCTCACGTgaggatgaagagggggaggaggagggggttcaGACGAATAACAGCCACAGGAGGAGGACCACAGTGTGGGGGcgtagggggaagagagatgggtGGGGAAAAGAGGAGGATTTAGAGGAGTACTACTTCTCCAAGTCGGCCTCGGTGGTGCAGCGACTTTGGCGGGGAAGTGTTTCCTCTGGAATGCTGTCCCCGCGGCTGCAGCGCGCTATGCGTGACTACCTGAGTGCCAACAAACACCACGTGACCTATGAAGGACGCAGATGGGCTGCCCAGAGCTCCAGGGGACTGCTGTGTGAGCTGAAGGATCAGGCCAGGCTGAGAACACTGGACGGGTCCGAGCAGCCCTTCTCCTCGCTGGGCTGGGCCCATCTGGTGCCACGCCTGGCCCTGGAGCAGCTCTACAGACAGGGGGGCCAGAGGGGCTTCAGGAGCTGTGCTGTGGTGACCTCTGCTGGGGCTATTCTGCACTCAGGCCTGGGGAAGGAGATCGATTCCCATGATGCAGTTCTGCGGTTCAACGCTGCGCCTACAGAGGGCTACGTGAGAGATGTGGGGAACAAGACCACCATTCGCATCATCAACTCACAGATCCTGGCCAATCCCAAGAACCACTTCAACACCAGCTCCCTGTATAAGAAGGTGACTCTGGTGGCCTGGGACCCTGCTCCGTACGCTGTCAATTTGCACaagtGGTATGCCAGTCCAGACTATAACCTGTTCAGTCCATACGTGGAGCACCGGAGGCTCCACCCCACCCAGCCCTTCTACGTCCTCCACCCCAAATATGTGTGGCAGCTCTGGGACGTCATCCAGGGCAACACCCAGGAGACCATCCAGCCCAACCCACCCTCCTCAGGGTTCATAGGCATCCTTCTGATGATGGCGCTGTGCGAAGAGGTCCACGTGTACGAGTACATCCCCTCGCTGCGACAGACAGACCTGTGCCACTACCACGAGGGCTACTACGACGCAGCCTGCACCCTGGGGGCGTACCACCCACTGCTTTACGAGAAGAGCCTGGTGCAGCGCATCAACACAGGCCCCGAGCGAGACCTGAAGAGGAAGGGGCGCGTCACCCTCCCTGGCTTCAGCACCGTCAACTGTGACCTCTGAACTATCAACTTATGAACTCTGACCCTTAAAAGAAGCCACATGTGGAACCACCACAACCCCACAGGACAAGGGGGAAATGGTGCAATAATAACCCTCTGACCTCTGGGGGAACCCGGAGGGAACCACATAGAACAGTGGAGAACCCAAGCCATAGCCCCTCTGTGTGGGATGGGATCAAACCGGAGGGTGAAGGTCTAGTGTAACTACATttatgtcaggaattttgaacaGAACCCAGACGGGGTGAAACCCAGCCTTCCTTAGAGGATAATGGACCCAAGACGGCCTGAAGTGACTGTATCTCCCGATCTCTGCCATTGCTGAGCCGgaagagaggagagctgtatagtgTAGCAGTAGATTAGTGTtattagattatttttttttatatacagtaccagtcaaaagttggactCAACCCCTGTAATGAgtagttttctttatttttactattttccacattgtataataatagtgaagacatcaaaactatgaaataacacacggaatcatgtagtaaccaaaaaagtgtatattttatatttgagattcttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031398 lncRNA downstream 1331 8619447 ~ 8623484 (-) True G1773825
TU2031430 lncRNA downstream 8007 8616602 ~ 8616808 (-) True G1773857
TU2031428 lncRNA downstream 9799 8614671 ~ 8615016 (-) True G1773855
TU2031424 lncRNA downstream 15892 8608717 ~ 8608923 (-) True G1773851
TU2031343 lncRNA downstream 142409 8480013 ~ 8482406 (-) True G1773773
TU2031482 lncRNA upstream 18498 8703283 ~ 8703505 (-) True G1773906
TU2031555 lncRNA upstream 120554 8805339 ~ 8805639 (-) True G1773966
TU2031517 lncRNA upstream 136069 8820854 ~ 8824347 (-) False G1773936
TU2031519 lncRNA upstream 136144 8820929 ~ 8826155 (-) True G1773936
TU2031523 lncRNA upstream 141516 8826301 ~ 8827680 (-) True G1773938
LOC110502043 mRNA downstream 131922 8443607 ~ 8492893 (-) True LOC110502043
XM_021578798.2 mRNA downstream 314346 8294881 ~ 8310469 (-) True LOC110501321
XM_036958618.1 mRNA downstream 321324 8294881 ~ 8303491 (-) False LOC110501321
XM_036958616.1 mRNA downstream 450937 8162076 ~ 8173878 (-) True mfsd9
XM_036958614.1 mRNA downstream 465300 8100745 ~ 8159515 (-) False inpp4aa
XM_021578804.2 mRNA upstream 52390 8737175 ~ 8742339 (-) False LOC110501325
LOC110502107 mRNA upstream 79239 8764024 ~ 8767825 (-) False LOC110502107
XM_036958620.1 mRNA upstream 85383 8770168 ~ 8782990 (-) False LOC110501327
XM_036958621.1 mRNA upstream 86106 8770891 ~ 8781605 (-) False LOC110501327
XM_021578812.2 mRNA upstream 86106 8770891 ~ 8782990 (-) False LOC110501327
TU2028728 other downstream 1160123 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 1368098 7251784 ~ 7256717 (-) True G1771092
TU2026785 other downstream 2664000 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 2799508 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 4850806 3447431 ~ 3774009 (-) True fgf14
TU2031467 other upstream 52394 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 52394 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 78507 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other upstream 78507 8763292 ~ 8768047 (-) True LOC110502107
TU2031716 other upstream 374191 9058976 ~ 9063201 (-) True gpr161a

Expression Profile