RNA id: LOC110502107


Basic Information

Item Value
RNA id LOC110502107
length 1519
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110502107
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8763292 ~ 8768047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATTTGGGCAGCCTGACCACGGTGGTTGCCAACTCAACCTACATCAATGCCCGTGGCAGCTTCGATGGCTCAAACCTAGCGGCTTTGTCTGACAAGTACCCCACCTGCCTCAAGCTGCCCCACATCAGTGTGTGAGGGCATCCAGGAAACCCTGGACCTGGCCTTCTAGTCAGTCTGCGTGGAGCAGCCCATTGGCAAACGCCTCTTCCGCGTGTTCCTTGAGGCTGCTCCCGAATTCATGGTCCTTGCCGCCTGTGGCTGGTACGACTTAGCAGAAGGCTCAGACCGGGCCCAGAAGGCGTTCAGTATCGTCCAGCGCTACCTGCAGGCTCTACTGTCCCTTTCTGACACCGGAGACGGTGAACCCCCTGCAGGGGCCTGGGGACGGCCTCTTTGCCCAAACACTGACCTCAGTACTGGGCTACCTCTAGGATGCTCCCTCCACCTTTTTCCTGGAAAGCATGTTCCTGAAGAGGTTCCTtcagtggagggaggggaggttcAGAGAGGTGTCTGCCTGTCAGATGAAGGCCACAGGGAATATGTATGCCTGCATGAAGCTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGGGCGATGGTGGAGAAGAGGATCCTTGCCAGGGTTCACAGTCACTTCAACGTGTTGCTGGCCTAGAATACTCTGTCTGGTTATGACCATCATGAATGGAGGTGACCTGAAATACCACATCTACCTGATAGATGAGAACAACCCAGGGTTTGAGGAGCCCAGAACCTGTTTCTATTCTGCTCCGATCATCCAGGGCATGGAGCACCTCCACCAGAAGAGCATCCTCTACAGAGACCTCAAACCTGAGAACGTCCTCCTAGATAATGAGGGTAATGTGCGTATCTCTGACCTGGGTCTGGTGGTTGAACTAAAAGTGGACCAGACAAATAGTGAAGGCTATGCTGGAACTCCGGGTTTAATTGCCCCGGAGCTGCTGAAGGGGGAGAAGTATGACACCTCAGTAGACTATTTCGCTGTTTGAGTTCATGGCCGCCAAGAACCCGTTTAGGGAACAAGGGTAGAAGGTAAGGAAGGAAGAGCTGAAGGAGCGTATCATGACTGGGACGGTGGTCTTCCCAGAGACATTCAGTGAGAACAGCAAGTCCATCTGCTCCGGGCTGCTGGAGAAACAGGTTGACCAGAGACTATGCTTCAAGATCGGCGCCTGTGACGAGATCAGGGCACACCCTATTGAAAACCTGTGTGGTGAGCTGAAGAGGAGAGTCCACAAGCGAGGACCAAGGACTCTGAAGGATCTGAAGagtttctgtatggaggaatggtcttaATTCTGTCTTCTCAAACATTATAGGAGACTCAGAGCTGTTATCGTGCCAAAGGGAGGGTGCACAAAGTACTAAGtgcaggggtgccaataattgtgaCAATTTTTTTTCATGAAATAATTATTTCATGATTTTATTTTCTTTGAAAATGTTTAACTCAAAGGATAGATTCATATGATATTTTAAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031482 lncRNA downstream 60519 8703283 ~ 8703505 (-) True G1773906
TU2031460 lncRNA downstream 84339 8679375 ~ 8679685 (-) True G1773886
TU2031398 lncRNA downstream 140540 8619447 ~ 8623484 (-) True G1773825
TU2031430 lncRNA downstream 147216 8616602 ~ 8616808 (-) True G1773857
TU2031428 lncRNA downstream 149008 8614671 ~ 8615016 (-) True G1773855
TU2031555 lncRNA upstream 37514 8805339 ~ 8805639 (-) True G1773966
TU2031517 lncRNA upstream 53029 8820854 ~ 8824347 (-) False G1773936
TU2031519 lncRNA upstream 53104 8820929 ~ 8826155 (-) True G1773936
TU2031523 lncRNA upstream 58476 8826301 ~ 8827680 (-) True G1773938
TU2031566 lncRNA upstream 159108 8926933 ~ 8929426 (-) True G1773977
XM_021578804.2 mRNA downstream 21685 8737175 ~ 8742339 (-) False LOC110501325
XM_036958619.1 mRNA downstream 79232 8631221 ~ 8684792 (-) False LOC110501323
XM_021578802.2 mRNA downstream 79239 8624815 ~ 8684785 (-) False LOC110501323
LOC110502043 mRNA downstream 271131 8443607 ~ 8492893 (-) True LOC110502043
XM_021578798.2 mRNA downstream 453555 8294881 ~ 8310469 (-) True LOC110501321
XM_036958620.1 mRNA upstream 2343 8770168 ~ 8782990 (-) False LOC110501327
XM_036958621.1 mRNA upstream 3066 8770891 ~ 8781605 (-) False LOC110501327
XM_021578812.2 mRNA upstream 3066 8770891 ~ 8782990 (-) False LOC110501327
XM_021578808.2 mRNA upstream 3066 8770891 ~ 8783019 (-) False LOC110501327
XM_021578811.2 mRNA upstream 3066 8770891 ~ 8783044 (-) False LOC110501327
TU2031467 other downstream 5484 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other downstream 20991 8737179 ~ 8743033 (-) True LOC110501325
TU2031399 other downstream 122886 8625022 ~ 8641138 (-) True LOC110501323
TU2028728 other downstream 1299332 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 1507307 7251784 ~ 7256717 (-) True G1771092
TU2031716 other upstream 291151 9058976 ~ 9063201 (-) True gpr161a
TU2031767 other upstream 333927 9101752 ~ 9103439 (-) False G1774133
TU2031771 other upstream 333927 9101752 ~ 9123249 (-) False G1774133
TU2031837 other upstream 521454 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 967417 9735242 ~ 9737856 (-) True fundc1

Expression Profile