RNA id: XM_021578812.2


Basic Information

Item Value
RNA id XM_021578812.2
length 2413
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110501327
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8770168 ~ 8783060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAACACGAATCTCGAGCTAACGGCTATCAAAGGCAATAGACTTGGGTGTTTATTGATTGAAAGGGGGGAATTTATACATTTGACATTCGAAAGGGATATTTGTCTATCTAGCGATCCCTCCAAAAGATAGGCTATCTGCTTTGTAACTTGGAGGTAACTTGTTATGTTAGCAAGTTAGCTAACCACTTGCTACTGCTAACTAGTGCGTTGACCGCGTTGGCTAGCCAGTTTGCTAACGTTGGCTAATTTACCCAACCGGCTAGAATTGCAAGACTGGTACACCTAGCTCCATTATCCATTATGGTTATCAAGCCCACCAGCTGACCATCAAAATATGAATCGCGTTATTGTAGTTAGCCAGTCATAGCTAATATAACTTAGTTACTTTCTCTTGCGCGTTAGTGTCAAGTTATTTTTATGAAATATTTCGTTGTCATTGATGGTTGCAGATGTATTCCTACAATATAACGTTAGTAGGCAAAGTTTTGTCCTAGCCTGCTAGCTAACAGTAATCTTCTAGTCTTTGCCTACCGACCAATTACTACACATACGACAGCTAGCAAACTAGACCATTtcgttatttttttttaccatttacgCCCGAGGCATCCGCGCGCTATTAATGTAATTCATAGTTATTAGCTCGGTGGCTAGCGATGTTACTTGGAAAAGCATCCATTTTGAGATTGAGACATGATGGACCAGAAAGCTGCCTAACTAATTCGTTAAGGTCAAACTATGCATGTAGGCATACCTCAGGCGTGGAGTGTTGAATTGCTTAGAAGCTTAAATTCATTATTTCAGAATCAAGATAATTTGACGTATAGTTTTGTTTCCTGTTTGGCGATAGGGATTtagacctcctcttcctctgtcctcgATGCCAACAAAACAGCCGTCGAAGAAGCAGACGAAAAGAGTGCACTCGTTGGTCTGATGGAAACCAATGGAGAACTGAAGGTTTTTATTGACCAGAATCTGAGTCCTAGTAAAGGTGTCTTGTCTCTGGTTGCTGTCCATCCTGCATCCCTCCCTGTGGCCAAACAACTACTGCCCAAAACACTGGGGCTCTCCAATGTCAACATTGCTCCACACATGGTTATTGGTACGCCCCAGAGGCCCAGTGTTTCCAGTGCCATACTGGTGAACAGCCCTCACACACCCAGCTCCCAGTTCCTCACACAGAGCCAGCCGGCCGACGCGTCGCCTTGGTCATCGGGGAAGCGTGGTAAGAAGGGGGAGAAGAATGGCAAGGGCCTGAGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAAAAGAAGGGTGTCACCTCGTACAATGAGGTGGCAGACGAGCTGGTGGCGGAGTTCAGCGCTGCAGACAACCACATCTCCCCCAACGACTCTCATGTGTATGACCAGAAGAACATCCGACGGCGTGTGTACGACGCGCTCAATGTGCTTATGGCCATGAACATCATCTCTAAAGAGAAGAAAGAGATCAAGTGGATTGGTCTGCCCACCAACTCGGCCCAGGAATGCCAGAACCTAGAGGTGGAGAGACAAAGGCGACTGGAGAGAATCAAGCAGAAGCAGTCACAACTCCAAGAGCTTATATTACAGCAAATAGCCTTTAAGAACCTGGTGCAGCGGAACCGACAGACGGAACAGCAGACCAACAGACCTCCGCCCCCCAACTCTCTCATCCACCTCCCCTTCATCATTGTCAACACTAGCAAGAAGACTGTCATCGACTGCAGCATCTCCAACGACAAGTTTGAGTACCTGTTCAACTTTGACAGCATGTTTGAGATCCACGACGACATTGAGGTGCTGAAGCGTATGGGCATGGCCTGTGGCCTGGAGGTGGGCAAGTGTTCCCCGGAGGACCTGAAGGTGGCACGTAGCCTGGTGCCCAAAGCCCTGGAGCCTTACGTCACAGAGATGGCCCAGGGCCCCATCAGTAACGTCTACATCACTGGAGGATCCTCCACCAACGGGGGGCGCCATCACGGCCAGGgcagtgacAGTGGTGCAGATGGTACCCTGGCCTCCAGCTCTAATGACTCTCACTACAGCGGCTCCCGTGTTGAGACCCCTGTGTCGTACATGGGGGATGATGACGAGGAGGATGACTATGATGAGAATGACGATGAAGATTAACCTCCTGCCACTCCACGCATTTCTCATCTCCAACATGCAGtctgtctctgcatctctctctgtatcgctttCTCTCAAGGGCGTTGAAGAATGTTTGAGTATGGAGGCTGTGCAACCCTCTTCTCAGAGCGGGATCCTGAATCACATGATAGCCAATGGCTCTCTGGGAAGTGTAGTTTATGGCTTTGGCACTGCTGCGTCCTTTCTGTGTATTATCACCCTCTTCTTGGCAAGCCATCCCACCCGAGAATAAAGCTACAACAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031482 lncRNA downstream 67386 8703283 ~ 8703505 (-) True G1773906
TU2031460 lncRNA downstream 91206 8679375 ~ 8679685 (-) True G1773886
TU2031398 lncRNA downstream 147407 8619447 ~ 8623484 (-) True G1773825
TU2031430 lncRNA downstream 154083 8616602 ~ 8616808 (-) True G1773857
TU2031428 lncRNA downstream 155875 8614671 ~ 8615016 (-) True G1773855
TU2031555 lncRNA upstream 22349 8805339 ~ 8805639 (-) True G1773966
TU2031517 lncRNA upstream 37864 8820854 ~ 8824347 (-) False G1773936
TU2031519 lncRNA upstream 37939 8820929 ~ 8826155 (-) True G1773936
TU2031523 lncRNA upstream 43311 8826301 ~ 8827680 (-) True G1773938
TU2031566 lncRNA upstream 143943 8926933 ~ 8929426 (-) True G1773977
LOC110502107 mRNA downstream 3066 8764024 ~ 8767825 (-) False LOC110502107
XM_021578804.2 mRNA downstream 28552 8737175 ~ 8742339 (-) False LOC110501325
XM_036958619.1 mRNA downstream 86099 8631221 ~ 8684792 (-) False LOC110501323
XM_021578802.2 mRNA downstream 86106 8624815 ~ 8684785 (-) False LOC110501323
LOC110502043 mRNA downstream 277998 8443607 ~ 8492893 (-) True LOC110502043
XM_036958625.1 mRNA upstream 15755 8798745 ~ 8807833 (-) True LOC110501332
XM_036958637.1 mRNA upstream 44745 8827735 ~ 8843882 (-) False LOC110501335
XM_036958633.1 mRNA upstream 44745 8827735 ~ 8843884 (-) False LOC110501335
XM_036958629.1 mRNA upstream 44745 8827735 ~ 8843885 (-) False LOC110501335
XM_036958639.1 mRNA upstream 44745 8827735 ~ 8851677 (-) False LOC110501335
TU2031541 other downstream 2844 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 2844 8763292 ~ 8768047 (-) True LOC110502107
TU2031467 other downstream 12351 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other downstream 27858 8737179 ~ 8743033 (-) True LOC110501325
TU2031399 other downstream 129753 8625022 ~ 8641138 (-) True LOC110501323
TU2031716 other upstream 275986 9058976 ~ 9063201 (-) True gpr161a
TU2031767 other upstream 318762 9101752 ~ 9103439 (-) False G1774133
TU2031771 other upstream 318762 9101752 ~ 9123249 (-) False G1774133
TU2031837 other upstream 506289 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 952252 9735242 ~ 9737856 (-) True fundc1

Expression Profile