RNA id: XM_036958627.1


Basic Information

Item Value
RNA id XM_036958627.1
length 3310
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC110501335
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8827735 ~ 8851748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCAGGGTGTGTagttttctctctttcctcctaccaGGGATGGGATTTCGGGTTAAATATTCAAAATGGCGGATGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGATTCTAGGATGAGTAATCCATCAGAAACTAGTAAATGTGCAATGGAGAGTCAGAGTGGGGACGGAAACACAGGAGTCCAAACGAATGGACTGGACTTTCAGAGGCAGACGGTGCAGGCCACAAATGCAATCACCAATGCACATGCACAGGCTCTGCTCCAACAGTCCAAGTCTGAAGACTCGGGTGCAATTCCGACCTCCGTCCAGCAGGGGGTGCTGCCTCAGGCCCAGCTCATGCTGGCTGGGGGACAGATAGCTGGATTGACCCTGTCTCCAGCGCAGCAGCAGATGTTGTTgcagcaggcccaggcccagcTCTTGGCAGCAGCCATGCAGCAGCAATCAGCCAGCCAGCAGAGCAGCACCACGGGGGCCAGCATCTCTGCCTCCGCAGCCACCCCCATCACACAGCTGCCCCTGTCCCAGCCCGTCCAGATCACCTCTattccctctgtctctacTCATCTCCCAGGCCAGCTAAGCCAGCTGGGATACCCGTATGAGATGGCGACCTTCAGCAGTTACCTACCTCAGTTACAGCAGCTGCAGCAGCAGAACCTAACCATGCCCCAGTTTGTCCTGGTTCAACCTGGCCACCACATCGCCACCCAGCTGCAGCCTGGCCAGTTCATCATCTCACAGACGCCGCAGGGCCAGCAGAGTATGTACACAACGCAGAGTTTCCTGCAAGCCCATAATCTTCTAACTCAACTACCTCAAAGCCAAGCCAACCTCCTGCAGACTCAGCCAAGCATCAACCTTGCCTCACAGCCAGCGACTCCGTCCCACACTATAGCAGCCACGCCCATCCAGCCCCTGTCCCACAGTCAGACCCCGCCCAAACGCCTGGACACACCCAGTCTGGAGGAGCCCAGCGACCTGGAGGAGCTGGAACAGTTCGCTAAGACCTTCAAACAGAGACGCATTAAACTGGGCTTCACACAGgGGGATGTTGGTCTGGCCATGGGCAAGCTGTATGGTAACGACTTCAGCCAGACCACCATTTCCCGCTTCGAGGCCTTGAACCTCAGCTTTAAGAACATGTGCAAGCTGAAGCCACTTCTGGAGAAGTGGCTCAACGATGCAGTTTGTGCAGAGAATCTGTCGTCTGACCTGGCCCTGTCCAGCCCTTGCGGCCTGGGGTCCCCCGGTCTGGGCATGGAGGGGCTCAACCGCCGACGCAAGAAGAGGACCAGCATCGAGACCAACATCCGCGTGGCCTTAGAAAAGAGCTTTCTGGAGCAGAACCAAAAACCTACCTCTGAGGAGATCACCATAATTGCTGACCAGCTcaacatggagaaggaggtgatCCGGGTGTGGTTCTGTAACCGTCGGCAAAAAGAGAAGCGGATCAACCCCCCCAGCAGCGGACACAGCATCACAGGGACAGGCAGCACCCCCATCAAAACCATCTTCACCCCCAATAGCCCCTTGGTGGCCAGTACGGCGAGCCTTGTGACCAGTAACACACCAACCACACTCACTTTAAACCCAGTGATGCCTCTCACCAGCACCAGCGTCTCCGGCCTGACCTTGACAGGCACGACGATCGGAGCGACCACAAACACGGCATCTGTCATCTCTACGGCACCCATGGTTACCGCGGTGACCAGCTCCACCTCGCTAAGCCCCTCCCCCACGGCCCTCCAGGCCACGGCAGCGGAGACGGATGGAACCCAGGAGCACACGGTGGTCATGCAGGCGCCATCGTCACTAGCAACCAATCTGGGGACAGGTCAGGTGATGGTGGCTGGACCGGGGCTGTCAGCGGCCCTGCAAGGAGCTGCCCAGTTACCCACCAGTTCTAGTTACGCCTCCATGGCTGGCCTTAACCCAGGACTGATGGCATCCTCACAGTTCACTCCTGGGGGGGCCTTGCTGAGCTTAGCTCCGGGTGGGCTTGGAGGGGCTATAAACCCCGCCATGTTGAGCAACAGCACCCTGGCCACCATCCAAGGTCTATGGAGCGCTCTGGCATCGGGTGGCACTCTCCCCATCACCTCGCTGGATGGGAGTGGTAACCTGCTGTTTGCTAACACCTCGTCCGGCAGCACCCCCAACCTGGTGCAGCCCCTCTTCCTGAACCCCCAGAACCTGTCCCTGCTCACCAGCAACCCCGTCAGCCTGGTGTCGGCCGGAGCCGCCGGGGGAGGGGCCCTGCAGGTCACAGCCAACCACCAGGTCACCACAGCGACCGTCCCAGTGCCCGCCTCCACCATCACCACTGCCTCCAAGGCCCAGTGAAGCTGAAGGCTCAAATTGCCTCGAATGACACCCTATgctctatttagtgcactacttttggttaAATGTTGCGTATGATATGGATGGCTTTGGCCATAGTAAgacactacatggggaatagggctgTTGTTTAAGATTTGCCCTTAGGCTATTTGCTCAATCCacttcttcatcctcttcctccttgtCCTTCTGCCTGTCATCTATCATTATTTAATCCTTTTGCTGCCACCAAAAAGAAACCCTCTGTGAAGAGGGTTGGAATTTATATTTTACGTTTTTATTTCATTATTCATTCTCTCTTTTCCCTTGTACTCCAAAAACGATGTGCGACTCCCTGGATGTTTTTGTCGGTGTACGCAGCGGGTCACACAGGAGGACTGGGGCGGCCATTTTCTGAGGCAGGATCATCTTGAACTCTATGGTCTGCGCTCCTTGTGACCCCTGAGGGACCACCTAGCTTTCCCTCTTTCCTTTCTGTCACCTTTTTCAAAAGTATATATCTTCCTCTTCCCTGTTCAGAACATCTTCTGAAATACTTCTAACCAAAAATTTGATTTAACTTTTTTGACGTTTTTCTTCTTCTAACAAAAATGATTTACTACTAAAGTTCACAATCTACATCATCACTAAAAGGGGGGTTTGCGTATTTCCCCGTCTATAGTTTGAATTTATTTTGTGTCGGGCTCTGTTGGACAGGACTCAGCACAAATCATATCAAAGTTATATTTTAGAGGCGCTTAGTTTGTTTTCTCTTATtttagtgtgtgtgagtggacATTTTCAGAACTTTGTACGTCTAACATTAATTTAAGCTTTAACTCTGATGTACagaaccagtcaacagtttggacacaccttctcattcaacagtttttctttatttttactattttctacattgtcgtaaaatagtgaagacatcaacactatgaaataacacatatggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031523 lncRNA downstream 55 8826301 ~ 8827680 (-) True G1773938
TU2031519 lncRNA downstream 1580 8820929 ~ 8826155 (-) True G1773936
TU2031517 lncRNA downstream 3388 8820854 ~ 8824347 (-) False G1773936
TU2031555 lncRNA downstream 22096 8805339 ~ 8805639 (-) True G1773966
TU2031482 lncRNA downstream 124230 8703283 ~ 8703505 (-) True G1773906
TU2031566 lncRNA upstream 75185 8926933 ~ 8929426 (-) True G1773977
TU2031631 lncRNA upstream 77906 8929654 ~ 8929886 (-) True G1774034
TU2031635 lncRNA upstream 80619 8932367 ~ 8937720 (-) True G1774038
TU2031636 lncRNA upstream 82330 8934078 ~ 8939330 (-) True G1774039
TU2031637 lncRNA upstream 83179 8934927 ~ 8940202 (-) False G1774040
XM_036958625.1 mRNA downstream 19902 8798745 ~ 8807833 (-) True LOC110501332
XM_021578807.2 mRNA downstream 44675 8770891 ~ 8783060 (-) True LOC110501327
XM_021578811.2 mRNA downstream 44691 8770891 ~ 8783044 (-) False LOC110501327
XM_021578808.2 mRNA downstream 44716 8770891 ~ 8783019 (-) False LOC110501327
XM_021578812.2 mRNA downstream 44745 8770891 ~ 8782990 (-) False LOC110501327
XM_021578834.2 mRNA upstream 89395 8941143 ~ 8951953 (-) False LOC110501339
XM_021578833.2 mRNA upstream 89395 8941143 ~ 8953086 (-) False LOC110501339
XM_036958648.1 mRNA upstream 193197 9044945 ~ 9060514 (-) False gpr161a
XM_021578845.2 mRNA upstream 196220 9047968 ~ 9063520 (-) False gpr161a
XM_021578855.2 mRNA upstream 305171 9156919 ~ 9165142 (-) False si:ch211-218d20.15
TU2031541 other downstream 59688 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 59688 8763292 ~ 8768047 (-) True LOC110502107
TU2031467 other downstream 69195 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other downstream 84702 8737179 ~ 8743033 (-) True LOC110501325
TU2031399 other downstream 186597 8625022 ~ 8641138 (-) True LOC110501323
TU2031716 other upstream 207228 9058976 ~ 9063201 (-) True gpr161a
TU2031767 other upstream 250004 9101752 ~ 9103439 (-) False G1774133
TU2031771 other upstream 250004 9101752 ~ 9123249 (-) False G1774133
TU2031837 other upstream 437531 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 883494 9735242 ~ 9737856 (-) True fundc1

Expression Profile