RNA id: XM_021578833.2


Basic Information

Item Value
RNA id XM_021578833.2
length 3884
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110501339
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8936033 ~ 8953086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGTTAGTTTCTCTAGCTCTTGAGGTATGGCCTTGATAGAAAGGCTAACGAAAGGAACCAATCAAAAAATGAACAAAAGTAAGAGATATACTTGATCACTATACACTTTGAAAATAGCATCTGGATTCCAGTCCTTTCATATTGGAATTGCTATCAGCTGTAAATCTATTGAAGTCTATTTCCCCCGGGGAATCGACAACAGTGGCGCGCTGCGGTAAAGCATATTTGTAGTCTTTTTGAAACCAAGCATAGTGGTCCTTTATGGCGAACGGATTTTTTTTTACTACATATTCCGGTAAATTCTTAATCGTTTTTTCTGTTGTACTGACTGACAAGACAGTTGTGCGCTGGGAACCAGGCTAGCGAATTTTGTGCATTATCGTATATTCTTCGCAGAATGGGAATATCAGATGTAACATTTGACACAACTGGTCCTGTGGTGGACTTGTCAGCCCAGGGTCTGCAGAAGCTGGAGCCCAGTTTCACCTGCTCTGATGAAACGCACACGCTCATCCTGGACCGGAACCACATCATGAAACTAGACCATTTGGAGAGGAGCCAAGGCCTCCAACAGTTATCTGTTGTTGGAAACCGCCTGGTGCGAATGATGGGTGTGTGTCGTCTGACCGAGCTGAGAGTTCTGAACCTGCCCAATAACAGTATTGGCTATATTGAAGGGCTGAGAGACCTGCCACACCTGAAGTGGCTCAACTTGGCAGGCAACAACATCAAGGTCATTGAGCAGCTCAACAACTGTGTGGCTCTCCAACACTTGGACCTGTCTGATAACAACATCTCCAACATTGGTGATGTTACCAAGCTGTTAGCCTTGAAGACCCTTCTCCTCCATGGAAATAGCATTACGACGCTGCAGACCGTTCCCACTCATTTGCCCAtccatctgtccatcctctcCCTGGCAGAGAATGAAATTAGAGACCTCAATGAGgtctcctacctggcaccCCTCCATGACCTGGAACAGCTCTCCATTATGACTAACCCCTGCGTCATGGTAACACCCTCGTTGCCTGGCTACGACTACCGGCCGTACATCATGAGCTGGTGTCTGAATCTCAAGATCCTGGATGGATATGTGGTGTCTCAGAAAGAAGGGTTGAAGGCAGAGTGGCTGTACAGCCAGGGCAAAGGTCGATCATACCGGCCAGGTCAGCACATGCAGCTGGTCCAGTACTTAGCCACCGTGTGCCCTTTGACCTCCACGACAGCCCTGGAGACCGCGGAGGATGCCAAGCTGGAGAAGATCCTCAGCAAGCAGAGgtTCCACCAGAGGCAGCTCCTGCAGCAGACCCAGGGGGGCTTTCCCAGCCCTCCCCGCCCCACCCAACTGGATGTGGAGACTCAAAGCCCCCGCCATGTGCCTCTAATAGAGGACGACAGAACCACAACGCCTGTGACTGctccatcagccagacagacagAGCTAGCGACGGTGCAGGTGAACACCTGGCTAGGCTGTGACCCCTCCCAGGTGGCCTCACCTCCTCTCCGTAGCCTCAGGGGTGTGGAGGAGCGCCTCTACCTGGAGGACGTCCAGAGCCAGACAGATGAGGACAAACACAACGGCAGCCTGCTCTCCTCCGAGTCCACCTTCCTCCTAGTCACCTCTGAACCCCCCCGCTCTGACAGCGAGGATGAGACGGAGACGTTTGAGCACGACTCGCTGGTACCCGAACACCCCATTCATCCCAAAAAGACCCTTGCTAAAAAGACCCTACAGGCACCCTTGGGGAAAGGGAGTGAgagccagaaggagagagagatggagagagaaagggtgtcAGGTGACAGCCACCTCACCTGTACCTTAACCTCAACTGCCGGTCTACCTATGATGGGAGATGACCAATCACAGACCAATGACAGCGCTCCGCTCCAGGGAGCATACTCAAACTGCAATGCTGTAGAGGTGAGGGCAGGGTCTAAGCAGGAAGATAAAGCATTGGTGAGATGTGATAGGCTGGGTCGCTGTGAGGCGGACAGGGCAGCCGTCAGGATCCAGGCATGGTGGAGGGGAATGTGGACTCGGCGCTGCCACCCGCTGGCCAAAGAGGTGCGGTGTGAGATCCGCCTGCGCAGGATGCAGGAGCACATAGTCTTCCTTTCTGGAGAGTTTGAGAGAGTGAGGCAGCAGCATGAAGAGGAGAGGTTGCAGAGACTGGTACAGGAGGAGGCTGTAAGGTTTCTATGGCGGCAGcTTCAGTCCATGCAGCAGTGGCAGTGTTCTGTAGAGGGGCAGCTGGCCAGCGTGACTCAGGCCGGGTCATCTCTTGCTCCAGCCCTGACCTCCGGGCTCTGTGACCTCCCAGCTCTTCGACTCCCCCTACCTCTGGCCTCCAGCACTGCAAACCCGGCCTGTACAGTCCTCTCCTTCCCAGACTCGGGGTTCCAGTCAACAGATGAACTGCAGGTGGGGCAGGAAGACACTTTCCTGAGCTGTGGGACGGGCGACTCTCTGGAGACTGTGCGGCCGCTGGTCGAGGGGGGGTTCCTGGCTCCTTGTGGTGGGGGGAACAGTCAGGACTGCAGTCTGCTGGAGCAGTACCTGTCCTCCGTgcaacagagagaagaggaggcagaggaggggggTGCCAGCGACAGAACAGGCACACCACAGCCGCCCTCATCTGCCGAAACAGCACAGCCTGACTCCCCCACTCAGAACACAGGAGACAGACACAtagcagcaacacacacactggaaagtCCAATTTGAAGTGCCTGTCCTGCTCCTAGTCTTCTGGGATTGGCTAAGAGACTGCCCATAAACTCAGTCCATCTGTGCTGATGAATGTTATTGATGGCTCTAACAGCGCCTCATAGACCTTACTGACTAACATCCATATAGCGAGTGGCATATGGACTCACGAATGTGTATACATTCATATAGCCTGGATGACTTTTCTCATTTTGACTTTAAATCTTTTGGACTGCTGCTAGCCTGGAGACCTGACTGTTCCTGCATTCAATAATGCTTTGTTGGTTGCCATGATTTGTCAGTCCAAGGACAATTAGGCTAATGCTTGATTTACATTCGGGCGACGTGGGAACGGTAGTCCCAGCAAACCTTAATTCATTTCGACCCCTGTGCCTAAGTCTTTGTTCTGCTGGTTGAATCTACACTTCCTTTAAGTGTAAGTATTAAGTCCATCTACCCTCCAACTTTGGTCATCTGCAACTTCCCTGTCTGTCATGCTCAtgcagtggttgaaaaagtacccagttgtcatacttgagtaaaagtaaagtttTTTTATAGAAAATGACTGGAGTGAAAGTCGCCGAGTAAAAGTCtagaagtatttggttttaaatatacttaagtatcaaaagtacaagtataaataatttcaaattccttatattaagaaatCCAGATCACAATTTTATTTTCtctttacggatagccaggggcatgctccaacacttAGATATcctttacaaacgaagcatgtgttttggaagtctgccagatcagaggcagtagggatgaccagtagTAGGGATGACCTTTCTTTCGGGAATGTAGTGTAGTGAagtaaagttgtaaaaaatataaatagtaaagtatagaTAACCAAAAAAactaagtagtactttcaagtattttttgtttttttacttaagtacttaacATAACGTTAGCACAGGGTGTAATCTGTATTTATCCCTATTTATTTATCCATCACATCATGGTATTTGTTATGTCCTTTTCCCTCTTGTTCTCTGTTTCACAGACCACAACCCTCCTAAAGCCCATTCCAAGCCCCTTAACCACCAAACCCTAAACCTTCATTACCCAAACTCCATCAAACCATCCTCGCTGCCTTTTCTGTATGAATAAATATCAAAACGGGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031637 lncRNA downstream 941 8934927 ~ 8940202 (-) False G1774040
TU2031638 lncRNA downstream 941 8934927 ~ 8940202 (-) True G1774040
TU2031636 lncRNA downstream 1813 8934078 ~ 8939330 (-) True G1774039
TU2031635 lncRNA downstream 3423 8932367 ~ 8937720 (-) True G1774038
TU2031631 lncRNA downstream 11257 8929654 ~ 8929886 (-) True G1774034
TU2031643 lncRNA upstream 5256 8958342 ~ 8958596 (-) True G1774045
TU2031670 lncRNA upstream 14408 8967494 ~ 8967732 (-) True G1774055
TU2031721 lncRNA upstream 90415 9043501 ~ 9043700 (-) True G1774101
TU2031724 lncRNA upstream 101132 9054218 ~ 9054535 (-) True G1774104
TU2031730 lncRNA upstream 113566 9066652 ~ 9066947 (-) True G1774110
XM_036958634.1 mRNA downstream 89395 8827735 ~ 8851748 (-) False LOC110501335
XM_036958648.1 mRNA upstream 91859 9044945 ~ 9060514 (-) False gpr161a
XM_021578845.2 mRNA upstream 94882 9047968 ~ 9063520 (-) False gpr161a
XM_021578855.2 mRNA upstream 203833 9156919 ~ 9165142 (-) False si:ch211-218d20.15
XM_021578854.2 mRNA upstream 203833 9156919 ~ 9165150 (-) False si:ch211-218d20.15
XM_021578853.2 mRNA upstream 203833 9156919 ~ 9165305 (-) False si:ch211-218d20.15
TU2031541 other downstream 173096 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 173096 8763292 ~ 8768047 (-) True LOC110502107
TU2031467 other downstream 182603 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other downstream 198110 8737179 ~ 8743033 (-) True LOC110501325
TU2031399 other downstream 300005 8625022 ~ 8641138 (-) True LOC110501323
TU2031716 other upstream 105890 9058976 ~ 9063201 (-) True gpr161a
TU2031767 other upstream 148666 9101752 ~ 9103439 (-) False G1774133
TU2031771 other upstream 148666 9101752 ~ 9123249 (-) False G1774133
TU2031837 other upstream 336193 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 782156 9735242 ~ 9737856 (-) True fundc1

Expression Profile