RNA id: TU2031610


Basic Information

Item Value
RNA id TU2031610
length 1410
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110501339
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8936033 ~ 8953086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAACAGTCAGGACTGCAGTCTGCTGGAGCAGTACCTGTCCTCCGTgcaacagagagaagaggaggcagaggaggggggTGCCAGCGACAGAACAGGCACACCACAGCCGCCCTCATCTGCCGAAACAGCACAGCCTGACTCCCCCACTCAGAACACAGGAGACAGACACAtagcagcaacacacacactggaaagtCCAATTTGAAGTGCCTGTCCTGCTCCTAGTCTTCTGGGATTGGCTAAGAGACTGCCCATAAACTCAGTCCATCTGTGCTGATGAATGTTATTGATGGCTCTAACAGCGCCTCATAGACCTTACTGACTAACATCCATATAGCGAGTGGCATATGGACTCACGAATGTGTATACATTCATATAGCCTGGATGACTTTTCTCATTTTGACTTTAAATCTTTTGGACTGCTGCTAGCCTGGAGACCTGACTGTTCCTGCATTCAATAATGCTTTGTTGGTTGCCATGATTTGTCAGTCCAAGGACAATTAGGCTAATGCTTGATTTACATTCGGGCGACGTGGGAACGGTAGTCCCAGCAAACCTTAATTCATTTCGACCCCTGTGCCTAAGTCTTTGTTCTGCTGGTTGAATCTACACTTCCTTTAAGTGTAAGTATTAAGTCCATCTACCCTCCAACTTTGGTCATCTGCAACTTCCCTGTCTGTCATGCTCAtgcagtggttgaaaaagtacccagttgtcatacttgagtaaaagtaaagtttTTTTATAGAAAATGACTGGAGTGAAAGTCGCCGAGTAAAAGTCtagaagtatttggttttaaatatacttaagtatcaaaagtacaagtataaataatttcaaattccttatattaagaaatCCAGATCACAATTTTATTTTCtctttacggatagccaggggcatgctccaacacttAGATATcctttacaaacgaagcatgtgttttggaagtctgccagatcagaggcagtagggatgaccagtagTAGGGATGACCTTTCTTTCGGGAATGTAGTGTAGTGAagtaaagttgtaaaaaatataaatagtaaagtatagaTAACCAAAAAAactaagtagtactttcaagtattttttgtttttttacttaagtacttaacATAACGTTAGCACAGGGTGTAATCTGTATTTATCCCTATTTATTTATCCATCACATCATGGTATTTGTTATGTCCTTTTCCCTCTTGTTCTCTGTTTCACAGACCACAACCCTCCTAAAGCCCATTCCAAGCCCCTTAACCACCAAACCCTAAACCTTCATTACCCTCCATCAAACCATCCTCGCTGCCTTTTCTGTATGAATAAATATCAAAACGGGACCCTCGCTTTCTGGCGTTCATTATGCATTCTCACCGATAACCCACAGTGGCAATATAACCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031631 lncRNA downstream 6147 8929654 ~ 8929886 (-) True G1774034
TU2031566 lncRNA downstream 6607 8926933 ~ 8929426 (-) True G1773977
TU2031523 lncRNA downstream 108353 8826301 ~ 8827680 (-) True G1773938
TU2031519 lncRNA downstream 109878 8820929 ~ 8826155 (-) True G1773936
TU2031517 lncRNA downstream 111686 8820854 ~ 8824347 (-) False G1773936
TU2031643 lncRNA upstream 15848 8958342 ~ 8958596 (-) True G1774045
TU2031670 lncRNA upstream 25000 8967494 ~ 8967732 (-) True G1774055
TU2031721 lncRNA upstream 101007 9043501 ~ 9043700 (-) True G1774101
TU2031724 lncRNA upstream 111724 9054218 ~ 9054535 (-) True G1774104
TU2031730 lncRNA upstream 124158 9066652 ~ 9066947 (-) True G1774110
XM_036958634.1 mRNA downstream 84285 8827735 ~ 8851748 (-) False LOC110501335
XM_036958648.1 mRNA upstream 102451 9044945 ~ 9060514 (-) False gpr161a
XM_021578845.2 mRNA upstream 105474 9047968 ~ 9063520 (-) False gpr161a
XM_021578855.2 mRNA upstream 214425 9156919 ~ 9165142 (-) False si:ch211-218d20.15
XM_021578854.2 mRNA upstream 214425 9156919 ~ 9165150 (-) False si:ch211-218d20.15
XM_021578853.2 mRNA upstream 214425 9156919 ~ 9165305 (-) False si:ch211-218d20.15
TU2031541 other downstream 167986 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 167986 8763292 ~ 8768047 (-) True LOC110502107
TU2031467 other downstream 177493 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other downstream 193000 8737179 ~ 8743033 (-) True LOC110501325
TU2031399 other downstream 294895 8625022 ~ 8641138 (-) True LOC110501323
TU2031716 other upstream 116482 9058976 ~ 9063201 (-) True gpr161a
TU2031767 other upstream 159258 9101752 ~ 9103439 (-) False G1774133
TU2031771 other upstream 159258 9101752 ~ 9123249 (-) False G1774133
TU2031837 other upstream 346785 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 792748 9735242 ~ 9737856 (-) True fundc1

Expression Profile