RNA id: XM_021578855.2


Basic Information

Item Value
RNA id XM_021578855.2
length 1650
RNA type mRNA
GC content 0.45
exon number 8
gene id si:ch211-218d20.15
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9156919 ~ 9165305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTTCATTTCTCATGATGTACCTTATTTCACATTGCTGAATGTTTTGATGGATTGGATCTCAACGATTCATTTATCTTGAACCGTTCAAAAATACCTCCGTGATCTTGAACGCACCCCTTGTCAGACAAAAATAATTCCGATCGGCAATGAGTGCAAATGTTTTCCGCAGCGATACACGGCCACTAACACACACCAACGTTCTTTTTTTTCTGGATGATAAAGGTCGATTTGTCAGATAATAGGTTGATAACGCTAATCGAGATATGGCAGCAGTCAGCTTCTCCGAGGCGCTCTGTCAGCCGTGCGTTTATCACGAGAAATTCAAAGCTATCTGTTCTGATCTAAACGTTGCAACCCTCTTGGGGGGGAACCTTATGTGCTGAAACCCCTGTGGTCAGTTGAGCTGAATGTAAAGAGACCCCTGATGCCTGTCCACCTGAGTCCAGAGCAGGTGGGGCTGGAGATGCTGTATCTCTGTGGACAACTGGACCTTCTCATCAGGGCACAGGTACACCAGTTCCAGGAGCAGCTGAGACCCAACTGTAGCCCTGAGGAGTCGGACACTTTCCAGGAGCAAGGAGCAGAGATTATTGATCAGATGCTCCAATGCTTAGAACACCTGCCAAGACCTATGCCGCACCTGGAGGACTATCTTGACATGGTGGGTCTGTCGACCATGTACCCTCGCGTGGAGGTGTTCCTCATCCAGGGCAGTCCAGTAGACATGCTGGAGAAACCCCCAATGGATGAATACTTCTCACACATCGGGAGGCTCAATCAGCTACTAGTACTTAGTCAGCAGCTAGAGGAGGATGTAAAACATCTCGGGAGCCACAAATACATCGCCCACCAGCTGTCAGTTATATATCAAGTGCTCAGCTCATTCCGAGGTATCCAGCCACTGTCGGTCCTGAAGAAAGAGATTGAGGCCAACTTCAGACAGATGAAGACATCTTTGCTGACAGAGGAGGGCTCCAGGCAGGAGCCTCAGCTCCCAGCACACTACATCAGCTGGATATTGGAGCTGACTCTTAGTATAACGTCAACAGTCTCCTCGCTACCAGAGGAACTCACTGAAGACCTGAGTCCAGCCATGACCTTTGTGTCCCAGCTATGACATCACACCTGACATTGGGCCCGTGTTACATATTACCAACCCGTGGAGCTGAGGGTCAACAACATTTGATTTTTTATTAATGTCCGACAGACCAACCCGGTGATTCAAGAATGATGCTTTGACATGTCACTGTCATTTTATTGAATAGGGTCCTGAGCTCTCATTGGTTAAGTGGATGAATGTTAATGAATGTGTTATAAATGTGTTAGGCCAAATGTCTAAAAAGAGGTGCTAAATAATGTTACTGTATGAAATTGCATTTGAACAAATTGTTTACATTGGCCAATAAATTAAATTGAGAGATAAGCCTATAGACTGAAAATCTTCTGAATTTCAATAACAGAGATTGACCACGAGTCATAGATTTGAAAGAGAACAGGCTAATCGGGCAAAATGGTCACGGAAGCCACGGATGTTCAAGGCCGACCGTGGTCGAGCATACATTGTTAGCGGAAAACAGGATAGTGAATGGAAAAATGGAAATCCTCATGGTCAATCATCGTCTTAATAAATACACATTTGAAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031801 lncRNA downstream 1081 9155383 ~ 9155838 (-) True G1774150
TU2031786 lncRNA downstream 21650 9133349 ~ 9135269 (-) True G1774139
TU2031769 lncRNA downstream 33670 9101752 ~ 9123249 (-) False G1774133
TU2031772 lncRNA downstream 33670 9101752 ~ 9123249 (-) False G1774133
TU2031770 lncRNA downstream 33670 9112770 ~ 9123249 (-) True G1774133
TU2031896 lncRNA upstream 163847 9328989 ~ 9332202 (-) True LOC110501351
TU2032039 lncRNA upstream 388882 9554024 ~ 9554342 (-) True G1774352
TU2032074 lncRNA upstream 470393 9635535 ~ 9735571 (-) False fundc1
TU2032085 lncRNA upstream 485951 9651093 ~ 9651451 (-) True G1774395
TU2032100 lncRNA upstream 501993 9667135 ~ 9667789 (-) True G1774410
XM_021578845.2 mRNA downstream 93399 9047968 ~ 9063520 (-) False gpr161a
XM_036958648.1 mRNA downstream 96405 9044945 ~ 9060514 (-) False gpr161a
XM_021578833.2 mRNA downstream 203833 8941143 ~ 8953086 (-) False LOC110501339
XM_021578834.2 mRNA downstream 204966 8941143 ~ 8951953 (-) False LOC110501339
XM_036958636.1 mRNA downstream 305171 8827735 ~ 8851748 (-) False LOC110501335
XM_036958655.1 mRNA upstream 262 9165404 ~ 9205109 (-) False med14
XM_036958656.1 mRNA upstream 262 9165404 ~ 9205109 (-) True med14
XM_021578857.2 mRNA upstream 124209 9289351 ~ 9291953 (-) False rpl8
XM_021578858.2 mRNA upstream 124209 9289351 ~ 9291965 (-) False rpl8
XM_036958688.1 mRNA upstream 163846 9328988 ~ 9371716 (-) False LOC110501351
TU2031771 other downstream 33670 9101752 ~ 9123249 (-) False G1774133
TU2031767 other downstream 53480 9101752 ~ 9103439 (-) False G1774133
TU2031716 other downstream 93718 9058976 ~ 9063201 (-) True gpr161a
TU2031541 other downstream 388872 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other downstream 388872 8763292 ~ 8768047 (-) True LOC110502107
TU2031837 other upstream 124137 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 570100 9735242 ~ 9737856 (-) True fundc1
TU2035106 other upstream 2675931 11841073 ~ 11843059 (-) True G1777196
TU2035206 other upstream 2875966 12041108 ~ 12041622 (-) True G1777286
TU2035374 other upstream 3103075 12268217 ~ 12270114 (-) True G1777441

Expression Profile