RNA id: XM_036958699.1


Basic Information

Item Value
RNA id XM_036958699.1
length 2497
RNA type mRNA
GC content 0.49
exon number 5
gene id dipk2b
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9829206 ~ 9836013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtctgtctgtcttactaaGAATCAATAGCTGGGTACAATAGTGCTGATTTTGCTCTCGCCTCTCAACTATGAAATACTTGTAAGTCCCTTTACAGTGAGCTCAGAACACAAGGGATTGCATGTATGAATGTCACAGTCTTAGTGAATTGACGGTGTTATGACATAGACATCTGTAATGACCTGCTGTCCCAGCTGAATGGTTGTCAATCAACACCGGTGGTCATGATTCTGGGGGaaatcacacacaaacatatttcCTGTGCACGTAGTACTGTATATTCCTAACACACTTCAATGTTACAGTAATGTGTGGCAAGAGTCCCTGAGTGTAACGTCGTAAGGAatattatgacaaaacattttccacatacagtagttaatgttgatacacccaaaacacacggcACGCAATGTCCCAAGTCACCTGTCAAACTTCTGCCATCTGCCAGAGAAAATGGTTCAACTTCCATTGTTTCCAACGGATGCCGTGCAATGGCCAGGAAAGATCAACTGAGCCTCAACTGTGATCCAAGACTAACATAGACTAACAAGACAAACATAGAAAATATCAGGGTAATACATTTGTTTTCTGATTATGATTTTTTACCTTATTCTTATGACAAGCCACCATATCGGCAACTGTTCAAGTGGCCAACTCAAGGTTTGATTGGTGGATGTCCCCCGATACCACACTCCCATTGGCTGAGAAGCAGAGTTTCCCGGGGAACCTTACAGATGATTCATTAAGCTGGCGTCCTGTGGTCTTGtcgttcctctcctccccccgtcTGCACTCGTCCTCCGACCGTTCAATCTGTAGCTCGGTGGGACGGCAGGGTCCCTGCAGCATCGAGGCCGTCCTCAGGGTCACACCCAGATTCCAGAGCTTGAACCAATCACATCTTTTGCTGCCCCATATTGTGAAGGGTTTGGCACCTCCCCTGCTGCGCTGTCCCTCCCAGAGACTGCTGGACCGCGTTGTGCGCCGCTATGCTGAGGTGGTGGACGTGGGCAGTGTTCAGATGAAGCACTTCTCAGAGAGAGACAAACTACGGCTGCTCTACACGCTAGCTGTCAATCAACAGCCTCTCATACTGCAGATGTTCCCAGGCACCGAGGGCTGGCCATTCCCCCGCTACCAGGGCTCGTGTGGCAGGCTGATGGTGTGGGCAAGCTCCAGGCCTCTGTGGGGCCTTTATGGTTCCTCCAGGGAGTTCATCCAGAGGGTGGATGTGGCCTACCAGCTACTCCAGATCACCCAGGGCCTGGGCCACAACAGTCTGGGTTTCCTGCTCTACTACACCAGGCTAGAGGAGGATATGTTCGGCCTGCTGGATGACCAGCGAGTGTTCATCACAGATGCCAGCAGCATAGGGGTCATTGACCTGGAGCAGGggttCCCCCCAGACCCTCCCTCCCAAACAGGCTCTGGCGGGGACATCTTCTCCTGCCTGGGTCAGGGTGCATCCCCCTGCCATCGCTCTCCTCCCTGCAGCTCTGTCCGCCCTACCCAGAGCCTCACTCTGCTCTGCACAGCACTCCTGCCCAGACTGCTGCTCACAGAGAGGGGGGCCCAGCCAACCAGGCTACCCATGGAGGGTGAGGCAGAGGCGGGGAGGTTGGCAAGAGACGTGCCCCTGTTGCTGGGTGTTTGTGCAGACCCTAGCCAGCCTGACTGGAGGATCATGGCAGCAGTAGGATCTCTGATGGACCTGCTAAAACCCATGAGGCCCTGCAACCCACGCTACACCTACAGGTACCCAGAGTGCAGATACAACCAAGACTACTGAGAGCTGACAGGACTACAATACCCATACTACCCTGCTACAGCCATAGACAATGTTAAGTCCACAGGTGCCCAGAGTGCACATATGAACTGTGATCCAGACAGTTGGTGGGACTGCAGAGCTTTGATATTAGACTGACAAAGGGACTCTGTGGAGTGTTGTGTGCTGGAATGACTATGCACTGAGCTGAATTGACTACGCACACAAAGGGGGTGGTGGTTCTGCACGGGCAGTGTATGTGAAGTCTGTAGTACTTAGCAGCTTGTAGTGCTTGGCTGTAGTGTAGTGCTTGCCTGCTGCTTACCTGCTTTAGACCTCAGCTACTGTCAGGTAGTGAACCGGTCACAGCAGCTCTGTGCATCATAGGAGAGATGAACATGTAAAGAAGAAACATGAGAAGTTCCACATGTAAATAAAGAACTTCTGTTAAATGACGCATAAAACATCTTTCAAACAATAAAAGCATGTCAAGGAGGGTCTCTGCACAATGCTTTGCTAAAGCAATTTTATTCATTTAGAAAACAGGAGGGGCCGTGTATAAAATGACACGACTCCTTCAAATTTAATGGCAGGAACTCTGAAGAAAAAAATGACAGCATTCCAACAAAGATTCTCAAGCAATAAATATGCATTTTATAAATAAGGTCAATTTACAACAAGATTAGAAATAaaatgaaaatcacaaattaaagtTTATTCCTTAAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2032159 lncRNA downstream 54529 9774413 ~ 9774793 (-) True G1774463
TU2032074 lncRNA downstream 93751 9635535 ~ 9735571 (-) False fundc1
TU2032124 lncRNA downstream 112929 9713522 ~ 9716393 (-) True efhc2
TU2032100 lncRNA downstream 161533 9667135 ~ 9667789 (-) True G1774410
TU2032085 lncRNA downstream 177871 9651093 ~ 9651451 (-) True G1774395
TU2032230 lncRNA upstream 29256 9864753 ~ 9864963 (-) True G1774525
TU2032232 lncRNA upstream 30887 9866384 ~ 9866827 (-) True G1774527
TU2032233 lncRNA upstream 32039 9867536 ~ 9867742 (-) True G1774528
TU2032194 lncRNA upstream 42767 9878264 ~ 9878804 (-) True G1774497
TU2032193 lncRNA upstream 43437 9878934 ~ 9912331 (-) True LOC118943578
XM_021578881.2 mRNA downstream 91426 9735242 ~ 9737896 (-) False fundc1
XM_036958692.1 mRNA downstream 94388 9713415 ~ 9734934 (-) False efhc2
XM_036958690.1 mRNA downstream 131298 9676683 ~ 9698024 (-) True ndp
XM_021578875.2 mRNA downstream 165856 9600179 ~ 9663466 (-) True mao
XM_021578873.2 mRNA downstream 250128 9577907 ~ 9579194 (-) True LOC110501355
LOC118943652 mRNA upstream 48173 9883670 ~ 9883794 (-) True LOC118943652
XR_005038788.1 mRNA upstream 68553 9904050 ~ 9912343 (-) False LOC118943578
XM_036958708.1 mRNA upstream 234046 10069543 ~ 10081582 (-) False slc35a5
XM_036958706.1 mRNA upstream 234046 10069543 ~ 10081622 (-) False slc35a5
XM_036958705.1 mRNA upstream 234046 10069543 ~ 10081799 (-) False slc35a5
TU2032076 other downstream 91466 9735242 ~ 9737856 (-) True fundc1
TU2031837 other downstream 537347 9289279 ~ 9291975 (-) True rpl8
TU2031771 other downstream 706073 9101752 ~ 9123249 (-) False G1774133
TU2031767 other downstream 725883 9101752 ~ 9103439 (-) False G1774133
TU2031716 other downstream 766121 9058976 ~ 9063201 (-) True gpr161a
TU2035106 other upstream 2005576 11841073 ~ 11843059 (-) True G1777196
TU2035206 other upstream 2205611 12041108 ~ 12041622 (-) True G1777286
TU2035374 other upstream 2432720 12268217 ~ 12270114 (-) True G1777441
TU2035584 other upstream 2785085 12620582 ~ 12624694 (-) True LOC110501411
TU2036122 other upstream 3333283 13168780 ~ 13172979 (-) False G1778140

Expression Profile