RNA id: XM_021579533.2


Basic Information

Item Value
RNA id XM_021579533.2
length 6421
RNA type mRNA
GC content 0.52
exon number 18
gene id itprid2
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31572817 ~ 31618605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTGCCTGCCCTCTGTCCCATATCTCTGCCTGGCTGGGAAGGCACTACTTTTAAGTGACATTTCAGACTGCTTTGGAATTATTCTTAGGATTCTTAGGATACTAGTTCTGGAGGAAGGAGGAATACCCACCAGGTGACTTGCCCCTCGCTGTAGCAACACAGCctgtggagaagaggaagagtggaTCCAGGAGAGGACCATGGAGCAGTGTGAGACTTCTGCGAGCCCCAGCAGGGATCACCCATGGAAGGCAGCGACCATGAAGAGGATGGCCTGGGCCCAGAGCAGAGACTCCTGGCAGGGCCCCTctgagagtcaggacacccaggATCAGGAGGGTTGCAGCGAGGAGATGGTGTCCCCGGAGCCCACCATGGAGACGACGGCCCCCGCCGAGGAGCCAGGGCGCTTCCCTAACAAGATTGCAAGCTGGCTCAAGGACTGCAGgaCTCCTCTTGGGGCGTCTTTGGATGAGCAGAGCAACATGCAGTCCAAGGGAGTGATGAAGAATGGATGCAGCTTTGAAGACGACTTGTCTCTGGGAGCTGAGGCCAACCACCTTCAGCCCAACAGTGCCAAAGCAGAGACACCCTGCTATGGAATGCCTGCGAAGGACAAGAGGAGCCAGTTCCGGCAGAAAGGCAGGAGTATGAACTCAACGGGATCAGGGAAGAGCAGCACCACTGTGTCCAGTGTGTCTGAGTTGTTGGACCTCTATGAAGAAGATCCAGAAGAGATCCTGTATAACCTGGGGTTCGGCCGGGAGGAGCCGGACATCGCCTCTAAGATCCCCACGCGCTTCTTCAACGGCTCCTCCGGAGCTAAGGGCATCGACATCAAGGTCTATCTGGGAGCACAGCTGCAACGCATGGAGATGGAGAACCCCAACTATGCCCTGACAAGTCGTTTCCGTCAGATCGAGGTCCTGACCACGGTGGCCAACGAGTTCTTCCATCTCTACTCCCAGGTCTCCGGCCAGCCTGTCCAGAAGATCTGCAGCCTGGATGGGGAACCGCTCACCATcgtccctccttctcctctgagGAGGAACAACTCAGCCCTGAACGCAGCCAAGATCCTGAAGAAGACAATCACTAAACACAACCTGCTGGGTgggttgggggaggggggtgcTCCTACCATCACAGCCCTGTCTACGACAGAGAAACTGGCAGAACATGTGAGTCCAGGTACAGGGGACAGCGCCGTCACAACTGACTCCGACCATAAGGGTGAGCTCAAGCAGAAGGCATTTAGGAAGAAGGACTCTCCATCTCTGGCCACTGTGACTGAGGAGAGCCACTCTGGAGGCAGCACTGAGGCCACCCTAAGTGTCAATGGAGACCACCCTGGAGTGAATGGAGATGGCCAGGCATTGACCAAGGAGGGTGACCTTCGCCTGTCCAACGAGGCTGACTTGGAGAAAGAGCACCAAGACATTCAACTGAAGGGCCAGCGAACAATCACATCAACCCCAGACAAAGAACCTAACTACAGCCTGCTGCCCAACCCTCACATCGCCCACCTCCGCACACAGACCAAGGACTCCTTTGAGATGGAAGAGGTCCAGAGTAATGAGGATGAGGCTTTACCTGGGACACACAGCACCTCTAGAGCTGGCAGTGAGCAACTACTAAGAACAGCCAGCCAGCAGTCAGACAGTAGTGGCTTTGCAGAGGACCCTTCTACTGACGGCTCAGCTAACTATCTAAAGGTACAGGAGAGCTCCGACAGCTGTGACAGTGAGACCACAGTGACGTCTCACGCTGGGGAGGGGACCACTCCTCTAGCGCTGGAACACCCTGCCTTTGGGAGGctgcagggggaggaggaggagggggaggaggagggacagaaaCACCTTGTGGCAGACGGAAGGAGGAGCCGGAGCCCTaatgggggggaggaggagcaacAGGAGGTGCTACAGTACACCACCCATCAGTTACCTAAACAAGGAGACAGAGGGGTGGCCCAAGACTCAGAGCAGGACCAGAAGCATAACAAGGAAGCTGCTTCTGTTCATGCCTCTGACACTTTTCAGTTAACTCCTGAGACTTACTGTACTGCTGAGCCTCACGTGGAGGATGATCCTGGTTCTACAGAAGACCATGGCTCCGTCCCGGCCCCAGACTGTAGCTCTTCTGGTGCCCCAGCCAGGGAGGGTGTGCCTGACAAAGTGGAGATGGAAGCCAGAACCCCCAGCCCTAGCGCCAGTTGCCCTAGCCTAGGTGCCTCAACCAGGGTCCAAGGGGCCCTTCACAGGGCCCAGCAGAGGGCCTCGTCCTCAGGCCTCCAGGGTCACCGGATGGAAGGGAAGCTGACAGCcagggatctgttcaggagaagAGCCCCCCTGACGAGGTCCCGATCCCTGcctacctccctcctcatcccctcccGTGTGGTCTCCTCTGTCAGGATCCAGTTTGGCCAGGGTACAGTCAGGCACTGCACCCAGCCAGCCTTCTCCTACCAATACAccccagaagaggaggaggaggtggggtccatcgtggaagaggaggaggaggaggaggaggttgttGAGGATGGGTGTCAGAGGAGAGACAGCTGCCTCTCTACCTTGATTATCAACAGAGGGACCGAGATATCGCATGGCCCCGGGCTACAAAGAGATGGTGAACTGAGAGGCCTTCAGGGCAGGGTGCCCCCTTACCCCCTGGCCATCCCCCGCCACCTGACCCGCTCAACCGTCTCACTGCACAGCCACAGCCCCCCTCCCGAGTGGGGAGAGAGGCCTTTGGGGGAGCACCACCGTGCCTGGAGCACCTGTAGCGTACCTAACCTTACCCAACATAACATGGCCCACTTCAATAACCCTAACCTCACCCAGCATAACCTGGCCCACTTCAATAACCCTAACCTCACCCAGCATAACCTGGCCCACTTCAATAACCCTAACCTCACCCAGCATAACCTGGCCCACTTCAATAACCCTAACCTCACCCAACATAACCTGGCCCACTTCAATAACCCTAACCTCACCCAGCACATCAACCCTAACTCCAACCTAACACAGCACTACCTAGTCCAACACAATCAACCTAACCTTACTCAACACAACCTTGCTCAGCACAACAACCCTAACCCAGCCCAGTACAACCCCActctgccccatggcagtgtCCCCAACCTAGCCCAATACAGCAACCCTAATCCCTACTTGTCCCACCACAATAGTCCCACCCTACCCCATGGCAGTGTCCCCAACTTGTTCCAGTATCAGCcctccacccaccaccaccacaccctcCATAGCCACCCTACCCATCCTTATGGTAGTGTACCTAACCTTCCCCAGCACCCAGCTCCCACCTTACCCCATCATGTGACCCCTAACTGTCCTCCTTCTAGTGCTCTGTACACTAACATGGGTAACCTTCTTCCACAcaacttcccctgttccctgtacaGCTCCTCCTGTAACACCCCACCCCTTAGTGCCCCCTTCAGTTCAACTTACCATAACTACAGCGGTAACCCCTATAGTGGGTCCTACAACGAGCTAAGCAGCAACAATCCTTATACTGCCCATAGCTCTTACTCTAACCCTTCAAACACACCTTCCAACCTGCCTCATCTCTCTACTGCCCCCTATGGAGGACCATATAGTACTCCATACTTGGGCCACCACCCTCTGATCCCCTACCCTCATGACCCTATGGCTACAACCTCCCGTCTTCCCCCAGCCCTGTCTACCACTGAGATGCAACTGAGAAGGGTCCTTCACGACATCAGAGGAACTGTGCAGAACTTGGCTCAGAATTCATCAGAACGCGGAGCAGACACTCCCTCCGACATGTTCAACCCTCAGAGACCTGCCCAGCCACTGTATGAGaCTTCTCTCCAGGAGCTGCAGGCTAAGAGAAGGAGTCTGAATGTGTTCCGGACTCAGATGATGGATCTGGAACTGTCCCTGATGAAACAACAGGCGTTAGTCTACCAGCACCTCAGTCACGACGAGAGGCAGGAGGCGGAGCAGCTGCAGGGTCTACGGTCTGAAGTGAGACAGGAGCTGCAGGAACTAGAGCTCCAGCTGGAGGATCGGCTGCTGACCCTGAACGAGCAGCTCCGCTCTGCCAGCCAGCACAGTCTCTACCGCCACAGCATGGGTATGAAGAGAGGTCACAGCATGGACAGCCTGTCTAACAGTTCTGCTCTGAGAGCTATGGAGCCGATGTCAGACCTGCTGAGGGAGCAGCTGTACCTGCAGACAGAGCTGGGCTACGAGGGCAGGGCAGAGGGTGGAGCTAGCatggcccccacccccacctcagGCCTCTCTTCCAGGTCAGCCAGTCCAACGAGGTCCTCTGGACGTCACCCTGGCCCATCCCACGCCCCGGAGCTGTCCCTCCCAGGTCCCCAGAAGACTGGGATGTACCGGGCTTCCGTCTCCCTCACCCCGGCACCCCCTCCACGGCCTGGTGCTGCCACATGGGTATCCCAGTGCTCAGACCAGGCACTGCCAGTGCAAGgtcctggagaggaggaggaggttggaGGAGGGATAGCAGCTGTAGACCCTCACCTACTGGAGGAGAGGggcaaagagagaggaggaggtggtctaggaGAAGGAAGAGCAGACAACCCCAATCTACAGGAGCTCATCAAGGAGATCAAAGAGAGTCTAGCTGATGAGATCCGACAGGAGATAGTCAATGAGCTCCTAGCTGCCGTGTCTCCACGACGATCACCTGTGTCGACCAGAGAATATCCGCTGTGAACATGACGACAGTTGAACACTGATGAGGCCTGGTGTAGTCTCCCCAACCTGAACACTGGTGAAGCCATGCACTGAACAGCCCAACAACCCCTTAACACTGTTTCAACTATTTACAGAGATCATGTCAGATGTGTTAACACTGTGTTTCTACCGTAGGAAtagaattatatttctatggtttcTACTTCAGAGAGTGTGACGGTGGCTGGTACCTTAACACCCGCATGCCTGGTGACCTGGGAGACACAAATGATGCTATATATTTGCTTTTATAGTGAACTCTTCTTCTGTCTTAACGGTCCAATTTCAAACACAGAATGTTACTTGGTGTGTTTATTTTGCTGAAGATTAACTATGTTGTTAAATAATCATGAACATTAACCCAAAATGAAATGATTTTGACATGCAAAAATGTGTTTAAGGTTAATTCTATGATTTTCTTTTTCACCCTGGCTGTGTGTGACGTTATGTTACGTTAGGCCTATGCCATGATTCTGACGTTGTGTATGGGTTGTATTTAAGCACGTAGATGTGGGTCAGAGTGCATGTCTTGTCCTGAAGGTGTAAGATGACCAAGGTTGAGGAGACTTAAGGCCTGGTTGATGATAATGGTTGTATGGGAGTTTAGTGTCTGCTGTAAATGACCATGCCCTCTTCTAATGCAACCTCTATGAGGAAtgaaccagacctgggttcaaatactatttgaaatctttgaaGTACTTTGAGCATTTTCTCTTGCCTGCCAGGAGGGTCAGATAGGTGGGGTTTACTGTTTTGGGACTATTATATTAGTGAATTAATCCAGGCATGCTCTGATAAAGTATTTGCACCCAGGTCTAGAACTAACTGTGCAATACATTTCACTGTCTCTGAACTTGAAAAGATCAATAGTAGAAACTACTGTTTTTGAAACGCACCACTTGAAGACAAGTGTATGCATTATATTAATTCCACACTTTTgtcctgggtcgtgttcattagggtaaCAATGGAAAACGTTTAAAAGCATTTTTCAACTAAATGAAAGTTTCTTATTGGACTAATAAGTCCAGTAAgtctctccctgtttcagtccattttcctCCGTTTGGTGGTTAATGAATCCGACCCAGATGTACGCGTTTTTGTTAGAAAACCGTCTCACGTGAAAAGCAAACAAAGTTCACATTCCTAACTGTATTTCTTATCTTAAACAGATGTTAAAACCACTAAATGTATTTGTCCTGATATATTTTCTTTAAAGGAATGAGGAAAGAGATACTGTAAAAGAGAGACTTCTGTCTTGAACTGGAGAGTAGAATGAACCGTCTCATCTGATAGACTCTGGTAGAACTGTCAATAGAGCCTATTGTTCCCGCTCATACTTTTGGACAGAATCATTGTGTATTTATGAGTATATTATATTTCAAATGTGAGGATTATAATGTTGTATTTTCCTGCTGGATTTGTAATTATAAGATGAAACAGACATTTATTTTACCACAGATGTTTAATTATATTGTTTTCCAAAATGATTTATTGTTACTAACTGATTTATTTCCATATGTGGCTACTTCCTGCTAATGGGGAGCTTCTTTTTAATCAGATTTAGTTTATCTTTATTTTGGGATGCATGAGGGATTGTCTCTATAGCAAATAATAaagatgtatttattttcaatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2059212 lncRNA downstream 126795 31445663 ~ 31446022 (-) True G1799464
TU2059123 lncRNA downstream 310028 31262405 ~ 31262789 (-) True G1799378
TU2059113 lncRNA downstream 315770 31255653 ~ 31257047 (-) True G1799371
TU2059059 lncRNA downstream 381800 31190798 ~ 31191017 (-) True G1799327
TU2059058 lncRNA downstream 382315 31190082 ~ 31190502 (-) True G1799326
TU2059458 lncRNA upstream 28841 31626560 ~ 31626781 (-) True G1799679
TU2059462 lncRNA upstream 33665 31631384 ~ 31631595 (-) True G1799683
TU2060044 lncRNA upstream 151204 31748923 ~ 31749178 (-) True G1800232
TU2060147 lncRNA upstream 321815 31919534 ~ 31919993 (-) True G1800334
TU2060152 lncRNA upstream 329907 31927626 ~ 31928431 (-) True G1800339
XM_021579531.2 mRNA downstream 5310 31544328 ~ 31567507 (-) True LOC110501758
XM_036959117.1 mRNA downstream 209126 31295950 ~ 31363691 (-) False LOC110501754
XM_036959118.1 mRNA downstream 209126 31295950 ~ 31363691 (-) False LOC110501754
XM_036959119.1 mRNA downstream 209126 31295950 ~ 31363691 (-) False LOC110501754
XM_036959120.1 mRNA downstream 209126 31295950 ~ 31363691 (-) True LOC110501754
XM_036959124.1 mRNA upstream 138368 31736087 ~ 31774009 (-) False itga4
XM_036959125.1 mRNA upstream 138368 31736087 ~ 31774012 (-) True itga4
XM_021579538.2 mRNA upstream 346855 31944574 ~ 31998145 (-) False ube2e3
XM_036959126.1 mRNA upstream 346855 31944574 ~ 31998179 (-) False ube2e3
XM_021579537.2 mRNA upstream 346855 31944574 ~ 31998351 (-) True ube2e3
TU2058841 other downstream 530601 31039193 ~ 31042216 (-) True LOC110501748
TU2058850 other downstream 577515 30976894 ~ 30995302 (-) True G1799132
TU2058911 other downstream 609283 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other downstream 609283 30961087 ~ 30963534 (-) True LOC110502090
TU2058565 other downstream 1053145 30486989 ~ 30519672 (-) True G1798869
TU2061092 other upstream 1106081 32703800 ~ 32704323 (-) True G1801195
TU2060961 other upstream 1162139 32759858 ~ 32777777 (-) True G1801071
TU2061278 other upstream 1352748 32950467 ~ 32953670 (-) True G1801352
TU2061248 other upstream 1360603 32958322 ~ 32960485 (-) False G1801331
TU2063359 other upstream 2920787 34518506 ~ 34540173 (-) True bard1

Expression Profile