RNA id: TU2064375


Basic Information

Item Value
RNA id TU2064375
length 526
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC110502094
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35138330 ~ 35471205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccttagaccactgcgccacactGGAGGCATTTACCTTATTCTAAAGGATGTTTATGGTTCTCTTCCTTTCAGTGGAGGAACCTTTTCTCGTACTGGCAGATCATCATGAAATCCGGAAACTAAGTGTGGATGGATCAAATTACACCATTTTGAAACAGGGCCTGAACAACATCATTCACATAGACTTTGACTACAGGAAAGAGTTCATCTACTGGATAGACTCTTCCAGACCCAGCGGACGGAAGATCAACAGAATGAGACTCAATGGGAGTGACCTTAAGTCCATCGGACTGCGGTCCCCAGTGCACTGGCCCTGGATTGGATAGGGAAAAACCTGTACTGGTGTGACATCGAGAGGAAGAGCCTGGAGGTGTCTAAAGCTAACGGCCTGTACCCCTCTGTCCTGGTCAGCACTGGTATCAGGAACCCTACTGACCTGGCCCTGGATCCACAGTCAGGGTATGCATTCTGGGTGGACTGCTGTGAATCTCCTCACATCAGTCGTGTGGGTATGGATGGTCGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2063767 lncRNA downstream 260762 34946365 ~ 34946701 (-) True G1803709
TU2063755 lncRNA downstream 268434 34938824 ~ 34939029 (-) True G1803697
TU2063635 lncRNA downstream 342305 34864859 ~ 34865158 (-) True G1803580
TU2063605 lncRNA downstream 364289 34842934 ~ 34843174 (-) True G1803550
TU2063583 lncRNA downstream 381192 34826065 ~ 34826271 (-) True G1803528
TU2064544 lncRNA upstream 185532 35405231 ~ 35448666 (-) True G1804450
TU2064629 lncRNA upstream 304238 35523937 ~ 35535622 (-) True G1804534
TU2064817 lncRNA upstream 406755 35626454 ~ 35627064 (-) True G1804710
TU2064943 lncRNA upstream 597705 35817404 ~ 35817865 (-) True G1804827
TU2064952 lncRNA upstream 604814 35824513 ~ 35828447 (-) True G1804836
XM_021579617.2 mRNA downstream 614775 34585700 ~ 34592688 (-) True LOC110501791
XM_036959169.1 mRNA downstream 663231 34473620 ~ 34544232 (-) False bard1
XM_021579628.2 mRNA upstream 477887 35697586 ~ 35738804 (-) True LOC110501794
XM_036959179.1 mRNA upstream 873489 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 873494 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 886348 36106047 ~ 36217789 (-) False LOC110502096
XM_036959200.1 mRNA upstream 886348 36106047 ~ 36228083 (-) False LOC110502096
TU2064031 other downstream 80630 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 667290 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 2246978 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 2253793 32950467 ~ 32953670 (-) True G1801352
TU2060961 other downstream 2429686 32759858 ~ 32777777 (-) True G1801071
TU2066167 other upstream 838145 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 1358049 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 1715959 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 1823862 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 2540272 37759971 ~ 37760248 (-) True G1807020

Expression Profile