RNA id: XM_021579628.2


Basic Information

Item Value
RNA id XM_021579628.2
length 2619
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110501794
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35697586 ~ 35738804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCGTGCACGTCCGGAAGGTGGGGTTTTGTGTTGTAGCGGACAGTTAGTCATTCTGTGTTAAATCAGTGGTACTTAGCAGCCCTATGCCTCGGTATGCACCATTAACGCGCTTATCAAGATAGCAGCAAGAAAGGGGAGAGGCCTGCTTTGGTGGTGTCAGTGAGTGTTTTGAGCaatagtgacagtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgacggtgtgtgtgtgtgagacagagaccAGCGATGGCTGCCAGTAAGAATAAGACCCAGAGTTCTCTGGCCCTGCACAAGGTCATCATGGTAGGCAGTGGGGGTGTGGGCAAGTCTGCACTCACACTGCAGTTCATGTACGACGAGTTCGTAGAGGACTACGAGCCCACCAAGGCAGACAGCTACAGGAAGAAGGTAGTGCTGGATGGAGAGGAGGTCCAGATCGATATCCTGGACACGGCTGGACAGGAGGACTATGCTGCTATCAGAGACAACTACTTCAGGAGTGGAGAGGGCTTCCTGCTAGTCTTCTCCATCACAGAACACGAGTCTTTCACAGCCACAGCAGAGTTCAGAGAGCAGATCCTGCGTGTGAAAGCGGAAGAGGATAAGATTCCTCTGTTGGTGGTGGGGAACAAGTCTGACTTGGAGGACCGCAGACAAGTGTCTGTAGACGAGGCCCGAGCCAAGGCAGAGGAGTGGGGGGTGCAGTACGTGGAGACATCAGCCAAGACGCGAGCCAACGTCGACAAGGTATTCTTTGACCTGATGCGGGAGGTGCGGGGAAAGAAGATGTCGGAAAACAAGGACAAAAACGGCAAGGGGAAGCACAAGAATAAGAACAAGAAGAGTTTCAAAGAGCGATGCTGTTTACTCTGAACGCAACATGGACCTTTACAACACAAAACACCACAATCTATCGTTACGCTGAGGAACCAACTTGACCAGAATCACAGAGCATCCATCCTCACGTTGAGTTGAAATATGTGTCTGTTAGTATTGAATCTGGCCATATTTTTTGTGTTGTTTAGCAGGTTTGGGGTCAGTTCTATTTAATTTGTCAATTCCAGAAGTTAACTAATATTCCAATTGCAATTTTGCTCATTGCTTTTTAATACAGAAAATTGGaatttggaatttcagtttacttgtTGAagtgaaatgtttgtttttttctaaaCCAGGTGTTTACCACATTCTCAACCACTGTTTTTGTATCTAAAACTTAAGCTTTGATAGATATtctggatgtttattttttttttatggaagGTGACCACTGTTCTGTGACTTGGACTGCAATGCATGAGCTCTCCCCTGATAACAACAAGCCAATTACCAAACTGCCCCAAACACTAACTTCAGTCTGCTTGGATCTTGTTCTGTCTATCTCAATATATCTGTCCTTTATGATCAACATATGATCATGCCATTTATTTTAGTCTACAACGTGCATGGGGATTTTAATCTAGAATGGGAATGGATCTGTGAATGGGGATAGGTTCAGTCAAGGACAGAAATGTAGCGAAACTCTATTCAATGCTTTTTACTGATGTCTGTTTGTGGTATGGACATCAGACTAAGCTTAGTTTGttaatgatttaaaaaatatatatttaccagTTAGTAAGAGGGACTAGGACTGAACGTGTCATTGTTTCCTCTACAATAGGATAAAGCAATTGTCAATCAAGAAGGCTCATCGTCTTAGGATTCAAAGCACATGTGATATTATTAGGGCCAGTCAGTTTACAttgtcaggaaaaactcctggccctggtCTAAGTAGGATGGATGTTGAAGTGTGAAGTTGTAACAGTTTACTAACCAGAGGTCCTGTGGTTCTGGACAGGCAGTGTTTCTGGAGACCCCTGCTGGCATTCCTTGGTAAATACAGGAACTGAAAATGGAACTGCCCCCACATCCATTAGTCCTTTCGATATGGGTCAGTTGGCACCATAAGAGTTGGCACCATAACTATCAGCCAGTCATCTTCAGTTTTGGGTTATTAATATTTGTACTTATTTTGGGTTTTATTCAAATGCTTTTTTTGTGGAAAGTGCACTACATTGTTGCCAATACCTTAAAAAAATAACTGTTCAGAGTTCCCATGCTAGAGAATGCTAAAGCAGTTTGTGCCATCAACACAAGGATAACATGATATCGGCCTACCAACTAATCACTATATAAATAATGTTTGTTAATTAACTGAGTGAATGTATGTGCATCAGACAACAGTTGATACTTCTGGTTCCTTTGTGTCCGTGTGAATGAAACCTGGGTCATGTTAtttggcaccaaatggaagaaaattgactgaaacaggaagggacttttttgttgttgctgaaaaacattgtgccctaatgaacaccaATCTGGTGAGGGACACAGTTTGTTTGCTGTTATTGTTGGATCAGTCACTCTGTTCTGCCCTACAACAGtaaagtaatatttccaacaactGTCCTAACTGTTCTGCTCTTTTATAAAAATGTGTGTCCTCTTCTGTTGTTTTAAAGCTAGTCTACTATTGATAGGTTTTTCACTGTCTTCTGAACAAAAAAATGTCTTCAAAATGTtgccaaataaatgcttttttCTTTGTAA

Function

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07835 RALB; Ras-related protein Ral-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2064817 lncRNA downstream 70522 35626454 ~ 35627064 (-) True G1804710
TU2064629 lncRNA downstream 161964 35523937 ~ 35535622 (-) True G1804534
TU2064544 lncRNA downstream 248920 35405231 ~ 35448666 (-) True G1804450
TU2063767 lncRNA downstream 750885 34946365 ~ 34946701 (-) True G1803709
TU2063755 lncRNA downstream 758557 34938824 ~ 34939029 (-) True G1803697
TU2064943 lncRNA upstream 78600 35817404 ~ 35817865 (-) True G1804827
TU2064952 lncRNA upstream 85709 35824513 ~ 35828447 (-) True G1804836
TU2064956 lncRNA upstream 90027 35828831 ~ 35829042 (-) True G1804840
TU2065028 lncRNA upstream 138628 35877432 ~ 35877693 (-) True G1804902
TU2066109 lncRNA upstream 227585 35966389 ~ 35968196 (-) True G1805874
LOC110502094 mRNA downstream 226381 35138330 ~ 35471205 (-) False LOC110502094
XM_021579617.2 mRNA downstream 1104898 34585700 ~ 34592688 (-) True LOC110501791
XM_036959169.1 mRNA downstream 1153354 34473620 ~ 34544232 (-) False bard1
XM_036959179.1 mRNA upstream 354384 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 354389 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 367243 36106047 ~ 36217789 (-) False LOC110502096
XM_036959200.1 mRNA upstream 367243 36106047 ~ 36228083 (-) False LOC110502096
XM_036959201.1 mRNA upstream 367243 36106047 ~ 36228083 (-) False LOC110502096
TU2064375 other downstream 477887 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 570753 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 1157413 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 2737101 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 2743916 32950467 ~ 32953670 (-) True G1801352
TU2066167 other upstream 319040 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 838944 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 1196854 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 1304757 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 2021167 37759971 ~ 37760248 (-) True G1807020

Expression Profile