RNA id: XM_036959194.1


Basic Information

Item Value
RNA id XM_036959194.1
length 8606
RNA type mRNA
GC content 0.50
exon number 42
gene id LOC110502096
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36106047 ~ 36228129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGGATTTTTCTGACGTATGCATCAATCTACGCGTAGACGGCTTGACAAAAATTGTAGCAGAAGGTGACTTAAACTTTTGTTCCACACATCCAGATGTTGCACACTATTTTGCGTAGACACTATTGGTGTGATCAAGGCGTTACTAGCTTGACAGGTTCAGAGCAACAGAACATGAGTCGCTTGGGTGGCTCTTGCACCATTGCGCCTCCCTTCACATAAACTACTGAGTTGCTGTAGCACTCTTCAAATTTAGAAACGCTGCATTCACACAACTATTAGCCACATCAAGGGCGATTTAATCCGCTGAAGGAAATATATTTAGGAGAGAAGTAGTGAACAGAAATGTGCATTCGCTAATTTCCAAGCGCATCCCCACGTCAATACCATTCTTGTCCAGTAAACGGTATTCCGGGTGGCGACTGAGGTGCCTCGATGCTGCTCAATAGTCATAACCCGACAATATTTACAAAGACTTCAGAAATTTGTATTGATCTTTCTGAGTATGGCATGGCCTTCCCGGGAACTAGGGACCACTAAGCTATGAAGCTCTTCCCTTCcagaccttccctgctctccTTCTCCAGTTACTGTCACTTCATGAGCCTTACCCACTGCTGCTCTCACAACCATCATCTCTGCCCAGCCTGGTACTAACAGAGTGGCTCAGACTCACTTCAacacaaagaagaaaaaaaagagagcgcgagagaagagaagaaaaccCTCCCCAGCTGCCATCCAGACACACATGGTGCATAGCTGCCATTCCCCaggctccctccatccctgcggCCTGACCTCTAGCTAGCTCCTCGCACCCATCATACAGCCTAGCCCACGGCCTGCCCAAGGGATATAAATAGGCTACATCAATCCAGTGTGTGGAGCCTGCTCTTGTGTTGCCTTTTTTTCCAGGGCACACACACCCGGTGGGGGTCACACCCATTTGTTTTCGGCCTTCCCACTGCCTGGATCAGTGGAAGCTAGTGGTGGGACCGAAGAGGGAGAGACGAGGCCGAGACCATGGAGGTCAATATGGAGTACTGTCTGGCCCAGGTGGTGCAGAAAGACCTGGGGAGGAAGGTGCAGGTGGGACAGGAGCTCATAGATTACATCCTGGATAAGGATAGGTCCCAGGATCTGGAGCAAGACCAGACAGGTCTGGACAGGATGGTGGACAGCATCGCTACCACCTGGGTCAACTGTTCCAACTTCAAGGTGGCTTTGCTTGGAATAGACCTTTTATCTGTCCTAGTGACAAGGTTACAGGACCGATTTAGGAACCATGTGGGAACAGTACTGCCCAGTCTGATAGATCGTCTGGGGGATTCCAAAGACCAAGTCAGAGACCAAGATCAAATCCTGCTGCTGAAGATCATGGAGCAGGCTGCCACCCCACAGtaCGTTTGGGACAGAATGCTGGGAGGCTTCAAACACAAGAACAACAGGACCAGAGAGGGAGTGTGCCTTTGTCTCATCTCAACGCTCAACATGTACGGAGCCCAAGGCTTAACCCTCAGTAAAATAGTCCCTCACATATGTAATCTACTAGGAGATCCCACCAGCCAGGTGAGAGACGGAGCTATGGGCTGCCTGGTGGAGATCTACAGACATgtgggggagagggtgaggatGGACCTCAGCAAGAAGGGCCTACCACAGTCACGgTTGAATGTAATCTTCAGTAGATTTGATGAAGTCCAAAGATCTGGGAACATGATCCCATCCTCGGGTTCAGATAAGAACTTTGATGATGAGGACTCTGTGGATGGGGGCCGGTCCTGCTCCTCCGCATCGTCCTCCAAGGCGCCCCCCACTGGTAGGAGGACTGTAGCTGCAGCTTCTGTCCGCAGGCCCAGCTCTGCCACCGGATCCGGCAAGATCTCTGCTAAAGATGCTGCTGCAGGAGCAGTAGATGAGGAGGACTTCATCAAGGCTTTTGAAGAGGTTCCTACTATCCAGatcCACTccaacagagagatggaggagaaccTCTCCAAGGTCCGGGAGGTTCTGTCTGACGACAAAAACGACTGGGAGCACCGAGTCATCGCTCTGAAGAAGGTGCGTTCTCTGCTCCTGGCTGGAGCGCTGGAGTATGAGAGTTTCCCTCAGCAGCTCCGTCTGCTGGAGGCCCCTCTGAAGCTGTCGGCTAAAGACCTGAGGTCCCAGGTGGTACGAGAGGCCTGCATCACACTGGGATACTTGTCCACGCTAATGGGCAACAAGTTTGACCACTGTGCAGAGACCCTGATGCCCACACTGCTCAACCTGGTGCCCAACAGTGCCAAGGTGATGGCCACGTCTGGCATGGCAGCCATACGTCTCATCCTCAGGCATACACACTACTCACGTCTCATCCCAATCATCACTAGTAACTGCACGTCCAAATCAGTGGCCGTCAGACGgcgcAGTTATGAGTTCCTAGAGCTGTTATTACTGGagtggcagacacacacactggagagGCACGTGGCTATTCTGACGGAGACCATCAAGAAAGGGATCCATGATGCCGACTCAGAGGCCAGGTCCGTGGCCAGAAAGTGTTATTGGGGTTTCCATGGCCACTACAGCCGGGAAGCGGAGCATCTTTTCCAGGCCCTGGAGTCGACCTATCAGAAGGCTCTCCAGTCTCACCTGAAAAGTTCTGACAGCGTTGTGtccctccaccaatcagaccgctcatcctcctcctctcaggAGAGCCTCAAccGGCCCCTGTCTGTCAAGAGTGTCATAGGAGGCGACATGAAAAGGGGGAAGATGGTGAGTTCCAGGGTGAACACTAACCCCGGCGGTTCTCTTCAGCGTTCCCGTAGTGACATCGACGTGAACGCTGCGGCCAGCGCCAAATCCTGTCTGGTCACCGTGCCCTCCGCTTCTCCCTTCAGCTCAGCCGCTACTCTGCCCCCAGGCTCCTACGCCTCTCTAGGTCGTGTGCGTACGAGGAGGACAAGCGCTGGCAGTGCCGTCGGAGCCAGCGCTACTGTGACTGACAGCAGGGGGCGCAGCCGAGCCAAAATGGTATCCCAGTCCCAgcGATCCAGATCTGCTAACCCCACTGGCGGTGGTAAGGCCCGGACTTCATCCAATCAGACTGGCAGTCGCTCCAGTTCCCCTGGCAAGCTGCTGGGCCACTCATCTGGGTACGGGAGGATCAGCAGGCCCCCCTCAGCCTCCAGCACCCCTGCAGACAAGAGGAGCAAGGTCCCCCGCAGCCAGGGCTGCAGTAGAGATTCCTCTCCCAGCCGACTGGGACTAGCAAGGAGCCGTATCCCCCGGCCCAGCATGAGTCAGGGCTGCAGCAGGGACACCTCTAGGGAAAGCAGCCGAGACACCAGCCCTGCTCGGGGCTTCAAGCCTCTTGaTCGGTTTGGTTTGATTCACCAGGACCGTATCTCTGCCTCAGTAAATGCCATGAGAGTCCTCAACACTGGCACTGAGGTGGAGGCTGCTGTGGCTGATGCACTGCTGTTAGGAGACTCCAGAAATAATAAGAGGAAGCCTATGAGGCGGCGGTATGAGTCTCCGGGTATCTATTCTGACGACGATGCTAACAGCGACGCATCCAGTGCATGCTCAGAGCGCTCATACGGGTCCAGGAACGGAGGTATCCCTCACTACCTGCGTCAAACGGAGGATGTGGCGGAGGTGCTAAACCACTGTGCCAGCTCCAACTGgtcagagaggaaggaggggctGCTGGGTCTGCAGAACCTACTCAAGAACCAAAGAATACTCAGCCGAGTGGAGCTGAAGAGACTATGTGAGATCTTCAGCAGGATGTTTGCAGATCCACACAGCAAGAGAgtgtttagtatgtttCTGGAGACTCTGTTGGACTTTATCTTGGTGCATAGAGAAGACCTGCAGGACTGGCTGTTTGTCCTGCTCACCCAGCTACTGAAGAAGATGGGAGCTGACCTGCTGGGGTCTGTCCAGGCCAAGGTCCAGAAGGCTCTGGACATCACCAGGGAGTCTTTTCCGTTTGATCACCAGTTCAACATCCTGATGAGGTTCATTGTTGACCAGACACAGACACCCAACCTCAAGGTGAAGGTGGCCATTCTGAAGTACATAGAATCACTGGCAAGACAGATGGATCCGACAGACTTTGTCAACTCCAGTGAAACCCGACTGGCTGTATCTCGCATCATTACCTGGACCACAGAGCCCAAGAGCTCCGACGTCAGGAAGGCAGCCCAGGTTGTGCTGATCTCTCTGTTTGAGCTGAACACTCCTGAGTTCACCATGCTGCTGGGAGCCTTGCCCAAGACCTTCCAGGACGGGGCCACCAAGCTGCTCCAGAACCACCTGAAGAACTCCAGCAACACCAGCAGCGTGagTTCTCCCAGCAACACTATTGGGCGGACCCCAAGCCGGCACCCCCCAAGCCGGACCAGCCCTCTCACTTCCCCGACCAACTGCTCCCATGGGGGGCTATCTCCCAGTCGGTTGTGGGGTGGGTGTTGGAGTGGCGATGGGCTACCTaagcacccccctccccctcatcctcctccacctcaCTCCACCCCCGCAGGCCCCGCCCTCAGGGTCCTCCGCAGAGCGTACTCTCCCAGTATGTTGGAGTATGACACAGAGAACATGAACTCTGATGAGATCTACAGCTCCCTGCGAGGGGTCACAGAGGCCATCCAGAGCTTCAGCTACCGCAGCCAGGAGGACCTCAACGAGTTGAGAGGGAAGAGGGACGATGCTgcgGGACGGGAAGGTGTGGCGCCCTCTCCAGGCTCTGATGCCCGTCTGGGGCTGGATGTGGTTGAGGGTGGGCGTACGGCCCTGGATAACAAGACCTCCCTTCTCAACACCCCATCCCCCCGCTCCTTCTCTGGGCCGCGAACCAGGGAGTTCGCCCCCTACGGATACGGAGACACCATCACCTCATCCTACGACAAGAGCGCCCTGAAGGAGGCCGTGTTTGATGACGACGTGGAGCAGTTTAGAGACTGCCGTCGGCAGGACAGCAGTGGTGAAAACAAGATGGTGCTGTCTAAGGGCTTTGCTCCAGGTTCCCAGGACCACTCGGACCTGGTTGCAGACCTGCTGAAGGAACTGTCAAATCACAATGAACGCGTGGAGGAGCGTAAAGGGGCGTTGGTGGAGCTCCTGAAGATCACCCGGGAGGACAGCCTGGCTGTGTGGGACGAACACTTCAAGACCATCCTCCTTCTGCTCCTGGAGACACTGGGGGATAAAGACTACACTATCCGGGCCATGGCACTGAGGGTACTGAAGGAGATACTGCGGAACCAGCCGGCCCGCTTCAAGAACTACGCTGAACTCACCATCATGAAGACCCTGGAGGCACACAAAGACTCCCACAAGGAGGTGGTAAGAGCAGCGGAGGAGTCTGCCTCCACCCTGGCCGGCTCCATCCACCCAGAGCAGTGTATCAAGGTGCTGTGTCCCATCGTTCAGACGGCTGACTACCCCATCAACCTGGCTGCCATCAAGATGCAGACCAAGGTGATCGAACGCATCACCAAGGAGTCCCTCCACCAGCTGCTGCCTGACATCATACCAGGACTACTGCAGGGCTATGACAACACAGAGAGTAGTGTTCGCAAGGCCAGCGTGTTCTGTCTGGTGGCCATCTACTCCGTGATTGGAGAAGAGCTCAAACCACACCTGCAGCTACTCACGGGCAGCAAGATGAAGCTGCTGAACTTGTACATCAAGAGGGCTCAGACAaccaacagcaacagcagcagttCCTCGGATGTCTCTTCACACAGCTAGCTGTaggagcagagggagggaaaCACAGATCCGTCTGCCTGTACTGTGCATATGAATTAGGGGGAAAaggttgcttcccaaatggcatccttttccctatatagtgcactactgttgtgctctggccagaagtagtgcactatatagggaatagggtgccatttgggacagatttATAGTCGTGCCTCTTCCAGACCTCTCCATTCCTGatcttttcttctctccttcaCCCCACTGGACTCCTCTGGTGACCCTATGACCTGCTCATCGCTCCAACCACCACTTCACTTACTTTGCTCTTTTTTCCCCCCATGGAACTTGTACCTTCATTTGTCTCGTCCCGtcgttgtcccccccccccagctgttATGACGCATCACTAGCAATGTGTTGTAAGGTAAAGATCAGATATTCATTTTGTTGAGCATTCAGTGTGtaggggtggaaacataaccaaggGTTATGATATGTGCCAATAAGAATGGTACTTATGGTCCAATACTAAATAATACCCTGATATTGATTCAGCAAAAACAAAACATCCCTTCAAATGCAATTGGATGAGTAAACACAGCCTGAAACGTCACAGTAGAATAGGCCCTTCACGTTtaaccaggaagtcccattgaggtcGGAAGACCTGTCAAGGGGGACCACATGACAGTCGGTTTGTGATAAAGAATCATATGGCTGGCCCAGTGAGGATACAAAGCCCTTATAAACAGTTTAGGAACAAGGAAAACCAAATATGTCAGCGAATGAAGTAGAATTAGTAGATTGTTTTTCTTTATTAACTGAGGTATGACGTTATACAATCCTATAAAAAGTGAAAGAAGGaaacattttattaaaaaaatgttaCGTATGTCAATCATTATAAAGACTAACTTAAGCCCAGGTAAGCTAACACTATGTTTTATTGTTAGTATCCATTAGTTTGGGAGAAATTATAATTAAACATTATCAGAGGCCAACTTCCAGCTAATAGCTTGGCTATATCATGAAAAGAAAATAGAAGTATTGTATTACATAAATGACCTTCATTTGACCTTCATTTTTTCAACCAGAAATTGGCAATCTAAAATTGAAGCTGTTCAAAATAAGGAGAGCGGTAAAGATGCAACAGTGTCTGAAGTTAGACAATCTGTCTTTCCAACTCACATTCAATTATCGTTGTGGTTAACTCCATTTCGATtgtcaaataaaaacaaatattaaGGGAAGAAAATACACCATTACATTTCTTTACATTCCCTGAATCAATCAAGTGAAATTGAATGGATCACTTCCAActcatagaattagaatgagtgTTCACAACCTACTCAATGTCCATGTTGCTAATGATGTCACACTGAATGAGTGGGCCATTATAAGTCATGACAACATACAAACTTGTCagtgaaaacactaaacaaatccaaagtgtcacatttatttattcCCAGCTATGTTGCCAGATTATGGCATTGATGCTGCTGTTTATAACGTATACCTGTCTGATGAGTAACAACCCTACACTTATTGATAATGCAAATATTACAGGCTCAGTTTTGGAAGGAGATCAGTGGATTCATTGAGACAGACTACTAGTCCTGGATTAAAAACTATTCTCAATGGAGAATATCTATTAAAAGTATGTTTTAGTCCTAGTCTTAATATGCGTCCAGGTAACCGTCCCAACTAGGTTTATGTTAATTTTCCACAGTAATGTTTGGATCACTTCTACTGTTGAAAAATAGGATAGATGTACATACAGAAGCTCTCAGCTCTTAAAAATGTGAATCCATTACTCCAGGAACTACAATAAACTGGCTTGCAAACCGATACAATAATATTCACCACGATGATGCAAATGTTAGTTGTTTATAATAATACAGTATTACACCCATCTTCTCATCACCTTCCTTTCACGCAACTACAGCTTTTGCAATAAAGAAAATACCATGATGAGCAAATTTAAGTATTTTGTACATAACTCTTGATCAATCACCACTTCGCAACTTTCGTGTAATGAAATAAAAAGGTTGGCTCTCTCACTTTTTTTGCACGCTAGCGAATTAGCTTGCATGTTTTTGGGCAGCACATCCACTTGGTGCTGCCTTTAATCGATGGGTCCTGTTTTCGCTGTTGAAGTGCACTTGTAACCGCATCAGTTTGGTCAGCCTTTACAACAACAGCCAGCCACCTGGCAGGAATACACTCACAGAGCTCTGTGAGTTGTCCAGAACTACGAAGACTCTGTCTGCCCTCGACAACTGTGTACACTGTACAGGACCTAACCGTCTCAAGATGCCAAGCAGACATATACAGTACTGGGTCTCCTTTAGTACAGTACTACATATTTGGGCATGTGGCTTTATAAAGGTacactgtgtgtgcgtgccttGTTACCATAGTAAAGTGTGTGGCATCTATTTCCATCTGTTGAACAGTTTAAAAAAATGACACTAATTGTTTgctttgtttgtttttaaatgGGGCCATCATCCTTTTGTAAGTATGTTCATTTTATTTGATTGTGTGTTAGGGAGAAGCCAATTGTTTTGTTAAAGACAGAAAGTACTGTATTGGCTGATCTGGCTGAAGATCTGGATCATTATCTGCTGGTGATGATGGTCCCTAAGAGAAGCTAATCCTAGCAATCTGTACCCTTTGCATGTTATTGTTTCTATTGTTTTGTCATTTAAGATTCATATCTGTATGTATGATAGTTTTATTTTAGTTGTAGTTTTTCATGACAACTTGTACAGAAGGGTTTCGTTAACATCCACCTGTGATAAATGATTTGCCTCAATGTACATTTGTTTGCTTTAGAAATAAACGAACATTCAAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066162 lncRNA downstream 50348 36055355 ~ 36055699 (-) True G1805922
TU2066160 lncRNA downstream 53039 36052792 ~ 36053008 (-) True G1805920
TU2066154 lncRNA downstream 60446 36045355 ~ 36045601 (-) True G1805916
TU2066148 lncRNA downstream 68893 36036953 ~ 36037154 (-) True G1805910
TU2066144 lncRNA downstream 72241 36033433 ~ 36033806 (-) True G1805906
TU2066216 lncRNA upstream 15070 36243199 ~ 36247813 (-) True G1805967
TU2066268 lncRNA upstream 52257 36280386 ~ 36287356 (-) True G1806014
TU2066308 lncRNA upstream 115028 36343157 ~ 36345530 (-) True G1806050
TU2066356 lncRNA upstream 213572 36441701 ~ 36512450 (-) True G1806092
TU2066444 lncRNA upstream 341485 36569614 ~ 36657977 (-) True G1806177
XM_036959179.1 mRNA downstream 3152 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA downstream 3152 36093193 ~ 36102895 (-) True tfcp2l1
XM_021579628.2 mRNA downstream 367243 35697586 ~ 35738804 (-) True LOC110501794
LOC110502094 mRNA downstream 634842 35138330 ~ 35471205 (-) False LOC110502094
XM_021579617.2 mRNA downstream 1513359 34585700 ~ 34592688 (-) True LOC110501791
NM_001160666.2 mRNA upstream 232 36228361 ~ 36232090 (-) True nifk
XR_005039052.1 mRNA upstream 1177 36229306 ~ 36229431 (-) True LOC118943734
XR_005039051.1 mRNA upstream 3020 36231149 ~ 36231276 (-) True LOC118943733
XM_036959073.1 mRNA upstream 19947 36248076 ~ 36318385 (-) True LOC110502097
XM_036959214.1 mRNA upstream 177612 36405741 ~ 36434386 (-) False hspbap1
TU2066167 other downstream 46279 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 886348 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 979214 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 1565874 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 3145562 32958322 ~ 32960485 (-) False G1801331
TU2066409 other upstream 349619 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 707529 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 815432 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 1531842 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 1965293 38193422 ~ 38195096 (-) True G1807750

Expression Profile