RNA id: XM_036959211.1


Basic Information

Item Value
RNA id XM_036959211.1
length 3880
RNA type mRNA
GC content 0.47
exon number 8
gene id hspbap1
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36405741 ~ 36441362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCATGTTGGTCCCTTCCTCAATAGATGTGAACGGGATTTTCAGCCCTTATTGAGTCGGAATGGCCCCCTAGTTTAACAATTACGGTATTATTGGGAAAAAGTCGCTCACCTGAGCCTGAAGATGACCCCCAAGCCCTTTAGCCCAGAAGAGATCCAGAGGATCCTGGGATCTCTCCAGAGGCCTGCCGTCTTCCTCAACATTACCTGTGATTGGCCAGTGCTCCTCTGGACTGTAGACCACCTGTCACGATGCCTTGGAGGGAAGGCTGTCCGGTTCAGAATGGGAAGGAGACAGCATGAAAAGACACCTCTTTTTGAGACTCAATGCTCATATGTGGAGGCCAAACTGGAGGAGTTTCAGTCCTGGACAGAGGGTCAGACTGGTGCAGAAGATGTGGGGTGTTTCTCGaactaccccctctctctgtactgGGCCTATGCAGACTACAAATACATTGCACTGCTGCTTCAAGAAAAGCCCTCCATGTTTGAGGACGTAGTGTGGTCTCAGTTTGGGTTCCCGGGTCGTAATGGGAGAGACAGCACACTGTGGATTGGTACCGAAGGTGCCAATACCCCGTGCCACCTGGACTCCTATGGGTATAACCTGGTACTACAGGTACAAGGAAGGAAGCGTTGGCACCTGTTCCCCCCTGCAGACACGAGTTGTCTGTACCCCAGCAGGATCCCCTATGAGGAGTCTAGTGTGTTCAGCCAGGTGGACGTGCTCCAACCAGACCTCCAGAGGTTCCCTGCTTTCAGACACGCCAGGGCCTACACAGTCACCCTGCAGCCTGGACAGGTGCTGTTTGTCCCCAGACACTGGTGGCACTATGTGGAGTCTGTTGACCCCATCACCGTCAGTGTCAACTCCTGGATTGAGTTGGAAGTTGACGATGAGGCGAGAGTAGGCGAGGCCCTCACCAAAGCCATCGTCTGTGCTCTGAAGACGACACCTAGTAACGACAATGATGATGACTGGCTCAATCCCACTGAGGAGGGGTTGGTGGGACATGACGAGAACATGCAGTACCTGAACCTGGCTGTGGGGGCCTgcatggagaagagagggataaCAAGTCACCGTGACCAACAGACCCAGGACACCCCAGCATGTCCAAGGGCAAAACGTGACTCCAGGGGCCAAGCTAAGAACACCAACtcttcatcaccaccagcagagtgcctttcctcctcttccacaCCATCCACCATGCCCTTTGGCCCTCACCTCATCCCTGTGGCCTGGAACCAGATCACCAACCAGGAAACTCCAGAGCAGAACCCCAAAAACCAAGACAGACCGTCACCATCCAGAGACTGTGACATCAGGTCTAGCAGCATAACCCAAAACACCCCTCCCAGACCTGTCAGTGGAAGTAGAGCCCAGCACCAGCATGGAGGGGAAGGCATGTCCAGCTCCGGTTCAGCCTCAGACCCCCTAGTGTTACCACGGCCAGGGTGCAGAGATGGAGGAAGGCCACCACCTGGGGACAGAGACCAGGGCAAGGGTGACAGAGCACACTGCTCCGTCTCCATCACCACCAACGACCTACTGCAGTGCCTGGTTCACCCTGAGGTCATTGCTAGAGTCTCTGAGCTACTGATGGAGAGAGTCCAGTCAGGGACAGCCACAACACCATAGCTTCATAATCTACATTCCAACGTTCATACTAGTATGCTACTGAAATTGAATCCCAAAATCCATTGCTTCATTCTAAGTGCTAAGCTAGTATGGATATTGAAACAGAGCCTAACAAGTAGATTGTACGTAACTTCCCTCAATTGTTAAAAATGTGGAATGGAGTCATCATCAGTAAGTCTATAGAGTTTAACTGGGTTCAGTTGACTTTAACAGCTGAGGTAGTGAAGGTGGAATATATCATGGTATTAATACCTCTGACACTGGCTCTTATTTCCCCTAATGCTGCTGGGAGTCtctggctacgtcccaaatggcaccttgtttcctatatagtgcactactattgaccagaacgGCTTGAAGATTAGGCGAGAGTAGAacggtcctggtcaaaagtagtgcactatatagggaatagggggccatttgggacgcaagcctCTGTGGAGTTAACAGTGCTCTGCCATGCTCGGCAGTGCCCACATGGGAAATCCTGCCTGGCTGATAGTTATTCCAAAGTGTCAGAGAAGGGAGAACGGAAAGACGTTTCACACTTTTCTATATTTTCTTACCCTTCTGCTCCTTCTTTTTCTACCCcatctacactgagtatacaacacattatgaacacctgctctttccatgacatagactgaccaggcgaatccatgtgaaagctatgatcccttattgatgtcacctgttcaaGCCACTTGACACAAACCTGTTCTTGACACTggtttgtatcaagaactgcaatgctgctgagtTAACGCTGAACGGTTTCCCGtttgcatcaagaatggtccaaccacccaaaggacatccagccaacttgacacaactgtgggaagcattggagtcaacatgagccagcatccctgtggaatgttttggacaccttgtagagtccatgccctgacgaattgagtctGTGCTAAGGGCAAAAgaggttgcaactcaatattacgatggtgttcctaatgttttatacactcagtgtatatggttTACTGTAGTATGTTATAGTCTTGGCGACTCCATGAGGTCAAATCCAAGTCAAGAGCATTTCTTCCATTCTTACCATGTTTGTAGTCTTGTGATATTAGACATGTATTTTCTACCTATGCCGAGCAAATAGCGCTCCAAAATAGCACTTAAAATTAAACCTTGTATAATCCTTGTAATAATAACAGTGATAGCTAGTATTTCTCAGATGTCGGCTACATTTTCTGCCTTCTATTCCCCAGCTGGTAGGTTatgtttgcgtcccaaatggcaccttattctaTATTTAGTGCACTCCTTTTTAGTGTTTTTTGGTATTTTATTGGGATCCCCTTTGAGCTGCTGCCAACCTGGAGCTTCCAGGGGCTACTCTTCCTCTTTAGACCAGTGCTCTGCCTTCCATTCCCCAGCTGGTACATTCTGTTTGCGTCCAAGGGCTCCGGTCTGAAGTGgaaggactatatagggaatagggtgtcagttGGGGTGAAGATGTTAGAAAGGCAGCCTGTTATGGTATTGTGATTAATGAATGCTGTCTAAGGAGTGATGATATGTCCCAGTTACCAGGAAGTGATGTGTtatttttctgtctctctatagTCCTGGGTCTGTGACAAGGGAAGGAAACCAAAGCTCTGAATGAATAAAGACTAGAAACATGTAGCGCCACCAACAATGAGGTAGTCCTGCAAAACCGTAAGAGTAGCAAGATTTTAGAAACAAAATGATATCACATTCAGAGAAatttacacatttttatttacgtACTACAAGAGTAAAATTCGAGTAAAATGGTTCCCAGGAGTGGAACGTTTTATGAAGGTCAATCTATCAAATGATTAGGACACACTAGACATTTTTCCTTGACTCATAGTTTTGTCATTTGAATGAGGCTCTTTTAGTCAGGTATTACTGGAGTTAAGTCTACTCCAGTATTTGTCTCAGGTAGACAGTCTAAAGAGCAGGGATGGAAATGAATCTAGGCCACTAGTAAAAATGGTTCTACTAGTTAAAAATTGCTCTACTAGTAACCAAAATCCTTAAGTTTCATGCCTGCTAAAGAAGGACCCTTTTCACAATGTTCTGTAATTGTTTTGTTTATCAACTACAAGAGTCTGTTGTTTTCATCTTTGAACATCATTGTAAACAGGGGACTTCAGATCATTCTACTATGTTCAGTAACATTTTAGAAATtcacaaaaataaaatacagcgtttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066308 lncRNA downstream 60211 36343157 ~ 36345530 (-) True G1806050
TU2066268 lncRNA downstream 118385 36280386 ~ 36287356 (-) True G1806014
TU2066216 lncRNA downstream 157928 36243199 ~ 36247813 (-) True G1805967
TU2066234 lncRNA downstream 186270 36218741 ~ 36219471 (-) True G1805983
TU2066178 lncRNA downstream 295927 36085336 ~ 36109814 (-) True G1805937
TU2066356 lncRNA upstream 6759 36441701 ~ 36512450 (-) True G1806092
TU2066444 lncRNA upstream 134672 36569614 ~ 36657977 (-) True G1806177
TU2066474 lncRNA upstream 177276 36612218 ~ 36612522 (-) True G1806206
TU2066588 lncRNA upstream 354813 36789755 ~ 36789992 (-) True G1806316
TU2066616 lncRNA upstream 403882 36838824 ~ 36858166 (-) True G1806343
XM_036959073.1 mRNA downstream 87356 36248076 ~ 36318385 (-) True LOC110502097
NM_001160666.2 mRNA downstream 173651 36228361 ~ 36232090 (-) True nifk
XR_005039051.1 mRNA downstream 174465 36231149 ~ 36231276 (-) True LOC118943733
XR_005039052.1 mRNA downstream 176310 36229306 ~ 36229431 (-) True LOC118943734
XM_036959195.1 mRNA downstream 177612 36106047 ~ 36228129 (-) True LOC110502096
XM_036959216.1 mRNA upstream 117756 36552698 ~ 36837583 (-) False LOC110501806
XM_036959217.1 mRNA upstream 117756 36552698 ~ 36837583 (-) False LOC110501806
XM_036959218.1 mRNA upstream 117756 36552698 ~ 36837583 (-) False LOC110501806
XM_036959219.1 mRNA upstream 117756 36552698 ~ 36837583 (-) False LOC110501806
XM_036959220.1 mRNA upstream 117756 36552698 ~ 36837583 (-) False LOC110501806
TU2066167 other downstream 345973 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 1186042 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 1278908 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 1865568 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 3445256 32958322 ~ 32960485 (-) False G1801331
TU2066409 other upstream 142806 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 500716 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 608619 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 1325029 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 1758480 38193422 ~ 38195096 (-) True G1807750

Expression Profile