RNA id: XM_036959236.1


Basic Information

Item Value
RNA id XM_036959236.1
length 4062
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110501819
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37545726 ~ 37575934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAAGCCATCGTTATCTAAAAGCTCAGTCAGTTGTGTGAGTCGGATGGAACGCGTCAATTGATCATTGAACAGAGACGTTTCTGTCTTTTTTTGTATGGATTTTTCTATTTCGTTCTTGTCATACTGTAACTGAATTGAAACGCGCACAGGTTGAACAGTTAGTGCATAAAGTGACTTTTGCGATATCGCTTTAAAGCGAATACCCTTTTCTGGGAACCTTTGAAGACCTGGATAACATGGACGGATTCTACGACCAGCAAGTCCCATTTATGGTCCTACCCAATCAAAAATCTCATGTGGAGGAACCATACAGCAGACCAATCATAGACAGCAGGAAAAGGAAGTTTGTAGACACAGTACTCGCCCAGGACACGGAAGACCTCTTCCAAGACCTCAGTCAGTTGCAGGAGATCTGGATTGCAGAAGCCCAGGTGCCTGATGATGAACAGTTTGTCCCGGATTTTCAGTCGGATAGCTTAATGTTTCATGGCCCCCCACCATCCAAGATTAAACGGGAACTGAGTCCTTCTGAAGAGATTTGTCCTTGTAACCAGGAAAGGAGTCCCATGCCGTATGGAGAGAAGTGCCTTTACAGCGACAGTGCCTATGAGAGGAGACCCAGTGGGGCCTATAAGCCATTGACCCCTCCCTCTACACCCGTGTCACCATGCAGCTCTACCAACACCCCAAGGACACACCCAGTCAGCCAGCAGACTCCTTCCCCTCATCAAATACCCTATCGGAACCAAGCGCAAGGGCCACACCCCCTGCAGCCTGACAACCAAGCAGTTGGCCCAGCCCACAACCAGCAGAGGCCACTCCCCCTCCAGAGCCCACCCTATGCAGTGCCCTGCCCCCCCTCACTCCTCAGTCAGGAGGGTAACTACAGCCCTGAGCACAGGTTCCAGAGGCAAATGTCGGAGCCATGtctacccttccctccctctgagAGCCGGACTCACCCTCAGTTCCTAGCCCAACCGCAGGCCCCCAGCCACAGTGCCCTACCCAGGGACGGGAGGCCCCCCTACCACCGCCAGATGTCTGAgcccctggtccctggtcccgtGCCTCAACACGGCTTCAAGCAGGAGCTGCTGGACCCTCGCTACACAGAGCAGGGTGTCCCCTCCATGGGTCCCCCTCAGGCTGCCTTCCACCCCATGGCCATCAAGCAGGAGCCCCAGGACTTCTGCTTCGACTCTGAAGTGCCTATCTGTCAGTCTACATTTGGAAGAGCCGGGACCTTCTACCAAAACAACCATGAAAGTTTCTCCTTTGACAGAGAGCCTCACCTGTACTATGATGATACCTGCGTGGTTCCTGACAGACTTGAAGATGGCCAGGCTGCTCCAGAGTACAGTGctcactcccccctccccccaaccaCAGGGAAGGTCAAGCAGGAGCCCTCAGTGTACCGTGATGGCCCACCCTACCAGCGGCGTGGCTCTCTGCAGCTCTGGCAGTTTCTGGTCACCCTATTGGATGACCCGGCCAACGGTCACTTCATTGCCTGGACAGGCCGGGGCATGGAGTTCAAACTCATTGAGCCAGAAGAGGTGGCTCGCCGCTGGGGCATCCAGAAGAACAGGCCAGCCATGAACTATGACAAGCTGAGTCGTTCTCTGCGCTACTACTACGAGAAGGGAATCATGCAGAAGGTTGCTGGCGAGAGGTACGTGTACAAGTTTGTGTGCGACCCTGAGGCCCTGTTCTCCATGGCCTTCCCTGACAACCAGAGGCCCAACCTGAAGGCCGACCCAGACAGCCTGCCCTGCGTTGGGGTGGATGATGACACCCTGCCCCTCACCCACTACAAGAACACACCTTACTTGGTGGACTCTGGGGAGCAGTGTGTAGTTCTACCCTACGGGTACTGACTGTCCCCCCCACTGCTCCTAAACCCAACCCAGAGATCAAGCTCCGACTGCTGAGGCTGAGCAAGAAACTGGATCAAACCTGAACCCGAAACCTCCCTCTCTCCGCTAAGTTACTCCTCCAATCCTGCCCACTTACGGATTAACATAACCCTCCCCATAAAACGACTGAGGAGAAACCTGCACCAACCACGTTCCTTGGCATCATCTATAGTACCAAGAGAGACCGTGGAAGTAAGGGTGTTATGGACTTCAGTGGCTCCGCCAACTCTCAACTCAAGGTGAACTGGTGTCATTGCTATGGAGACGAAGAGGAAGTAATGGACCAGGGGCCGTGTTATTATGGCAGCATGCCGGAGGACAGACCGCTAGATCTCTGTGTAGACTGCAAGAATTGTAACAGTTCTGATTTTGGACAATCTGCTTTTTCTAAAATAATTATATTAAAAGTTAATTCTGACAAAAGTATCTATAAATAAAGCACTATTCTGTAGTTGCCTTTTTGGTCCCcaataaatatgtatttttctgCCACATAGTAACAATAAGATCTGTGTAAGCAAGGGCTTTAAGTTGCAAAAAAACAAATAGTAATATTTGAATATTTATAAAGAAACCTACATACCTGTTGGTTTCTGTAGACTTGGTATAGAAAATAATGCTGTCTAGTCTACGATTGGTTAAGGATTTAGATCTGTAGTACTCCAGCCCAATAGGATATTCTATGGTTTCCATGGATGGATTCCTCAGACCAGTGACCTTTGTTTTTAATGCTGCCCCAGCTGTGTATTTATCCAGTGTAATGAATGTTTGTGCTGGGTTAGCTGAGGTTACCAGTGAGTAGCCAGACTAGCTCGGAGTACTGTTGCTCGGAGTACTGTTGCTGCGTCTGGAATGACCCTATGCACTCCTTTACAAAACCCatgtggctctggtcaaaagtagtgcactgaatagggtgtcatttaggatgcagacTCTGTCTTGTTGTCCATTCTCATTTCTACTGACACTCCACaacattgatttttttttttcataaacTACTTATATTTCCTAAAGGTTGTAACTAATCAGCATTCCACCTCAAACAATAAATCCCCTGCAGGAATCTTTCATTTTCCAAAAAGGGACAACTCTGTCTATTTTTCCCAGAGATTTAGAATTTTTACAAACCTAAGGTTatagctcttttttttttttctcattttattgGGTGCTTGATGTTTCCGCAGCAGTGAGTGTACTAGATTCTTAAATGCACCAGGATGGCATCTTTCAGGACATTGCATGCGAAGGTGTGGAATTATACACCTTTCCCTGGAGTCCTCTTTCTACCAATTGCAGGTTGTCAACAAGAGACCTCTGCTTCTCTTTGCATGACAGTGTATTCAAACAAACTGTCCACTAACATATGGCTTTACTCTGGACAAAGAAGACAAATTGTGAAAGTTCTCTGCATTTTGTTTGTTTCTTAAATGGGGGGAAAAAGACAaacttatataaatatatatttttgctaaGGCTGCATCTGATTTTATTGTATAAGCCTGTATAGTTCTGCCTATAACTCATGTATCCCTGTGACGTGATTAGCAGATCGTTTTCTTTTTAGAGGCCGTTATTGGTGAGTGAAATGGTAGGATGAAGAGCGAGAAAATAGTATTAGTTATAAAGAAGTAGTGTGACTTGGGTTCCATTCAGTGTGGTGcattggtctaaggcactgcatctcagtgcaaggggtgtcactacagtccctggttcgaatccaggtagtatcacatctggccgtgattgggagtcccatagggcggtgcacaattggcccagcgttggccggggtaggccatcattgtaaataagaatttgttcttcactgacttgcctagttatttaaagggggggggggatcccaaatggcaccctatttcctatatagtgaactacctTTTGAaaagagccctggtcaaaagtagtgcactatatataaaaTAGGGTGCCAATACAGACAGTTAAGAGATGTAAGTATCcacctctagtctctaccctGACCTGACCAAGGGTTGTCTGAACTTGTGTAGGcttcaccttctctccctcttcacaaTGTGTACCTTTACACTGCAAAGTTTATAATGATCTGTACTGGGTACAATAAACTCTTCTTTCTGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067038 lncRNA downstream 6227 37539300 ~ 37539499 (-) True G1806717
TU2067029 lncRNA downstream 16042 37529365 ~ 37529684 (-) True G1806708
TU2067007 lncRNA downstream 62041 37476336 ~ 37483685 (-) True G1806687
TU2067005 lncRNA downstream 63108 37475963 ~ 37482618 (-) True G1806686
TU2066922 lncRNA downstream 196469 37347512 ~ 37349257 (-) True G1806609
TU2067254 lncRNA upstream 17046 37576848 ~ 37578066 (-) False LOC110502101
TU2067253 lncRNA upstream 17849 37577651 ~ 37581365 (-) True LOC110502101
TU2067383 lncRNA upstream 199056 37758858 ~ 37759135 (-) True G1807018
TU2067395 lncRNA upstream 214406 37774208 ~ 37774524 (-) True G1807030
TU2067458 lncRNA upstream 288231 37848033 ~ 37848768 (-) True G1807074
XM_036959234.1 mRNA downstream 17100 37432933 ~ 37528626 (-) True LOC110501818
XM_036959233.1 mRNA downstream 17101 37432933 ~ 37528625 (-) False LOC110501818
XM_036959232.1 mRNA downstream 21049 37432933 ~ 37524677 (-) False LOC110501818
XM_036959231.1 mRNA downstream 21054 37432933 ~ 37524672 (-) False LOC110501818
XM_021579657.2 mRNA downstream 134216 37399070 ~ 37411510 (-) True LOC110501817
XM_036959239.1 mRNA upstream 16613 37576415 ~ 37723467 (-) False LOC110502101
XM_036959240.1 mRNA upstream 16613 37576415 ~ 37723467 (-) False LOC110502101
LOC110501826 mRNA upstream 203038 37762840 ~ 37765227 (-) True LOC110501826
XM_021579666.2 mRNA upstream 209858 37769660 ~ 37770890 (-) True LOC110501827
XM_036959243.1 mRNA upstream 219469 37779271 ~ 37779640 (-) True LOC118943607
TU2066735 other downstream 433252 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 609639 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 967015 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1485958 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 2326027 35207463 ~ 35219699 (-) True LOC110502094
TU2067385 other upstream 200169 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 633620 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 648988 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 1016064 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1384334 38944136 ~ 38944530 (-) False G1808299

Expression Profile