RNA id: XM_021579996.2


Basic Information

Item Value
RNA id XM_021579996.2
length 638
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110502128
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37839001 ~ 37840676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCACTGAGCTGTCACCCCCATCCACCGCCAACATGACTATGGGAAAGATAATCTTCTACGAGGACAGGAACTTCCAGGGTCGCTCTCACGAGTGTAACAGCGACTGTGCCGACCTGCACTCCTACTTCAACCGCTGCAACTCCCTCAGGGTCGAGAGCGGCTGCTTCATGGTCTACGAGCGCCCCAACTACATGGGAAACCAGTACTttgtgaggaggggagagtacCCCGATAACCAGCGAATGATTGGCATCAACGACTGCATCAGGTCCTGCCGTATGATCCCCATGCACCGCGGCAACTACAAAATGAGAATGTACGATCGTCCTGACATGGGCGGCCAGATGAACGAGCTGAGCGACGACTGCCCCAATGTCCAGGACCGTTTCCGTATGTCCGACATCAACTCCTGCAACGTGATGGACGGCCACTGGCTGATGTACGACCAGCCCAACTACAAGGGAAGGCAGTACTATGTGAGGCCCGGTGAGTACAGGAGGTTCAGCGACTGGGGTGGCCAGAGCCCCAAGATCGGCTCCCTCAGAAGGATCACCGACTTCAACTAAACCACAGCGCCATTTTAAACTATCAACTGTCACTCTGTCCACAATAAACTTTGATTCgtaatcaaaaaca

Function

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067395 lncRNA downstream 64477 37774208 ~ 37774524 (-) True G1807030
TU2067383 lncRNA downstream 79866 37758858 ~ 37759135 (-) True G1807018
TU2067253 lncRNA downstream 257636 37577651 ~ 37581365 (-) True LOC110502101
TU2067254 lncRNA downstream 260935 37576848 ~ 37578066 (-) False LOC110502101
TU2067252 lncRNA downstream 263067 37545729 ~ 37575934 (-) True LOC110501819
TU2067458 lncRNA upstream 7357 37848033 ~ 37848768 (-) True G1807074
TU2067459 lncRNA upstream 9425 37850101 ~ 37850374 (-) True G1807075
TU2067466 lncRNA upstream 11254 37851930 ~ 37853632 (-) True LOC110501831
TU2068053 lncRNA upstream 24288 37864964 ~ 37866937 (-) True G1807587
TU2068058 lncRNA upstream 32091 37872767 ~ 37873860 (-) True G1807588
XM_036959075.1 mRNA downstream 3829 37834053 ~ 37835172 (-) True LOC110502140
XM_021579995.2 mRNA downstream 7516 37830542 ~ 37831485 (-) True LOC110502127
XM_021579661.2 mRNA downstream 38910 37798979 ~ 37800091 (-) True LOC110501821
XM_036959243.1 mRNA downstream 59361 37779271 ~ 37779640 (-) True LOC118943607
XM_021579666.2 mRNA downstream 68111 37769660 ~ 37770890 (-) True LOC110501827
XM_021579670.2 mRNA upstream 11152 37851828 ~ 37860908 (-) False LOC110501831
XM_036959262.1 mRNA upstream 62472 37903148 ~ 37939168 (-) False LOC110502141
XM_036959258.1 mRNA upstream 62472 37903148 ~ 37967285 (-) False LOC110502141
XM_036959259.1 mRNA upstream 62472 37903148 ~ 37967285 (-) False LOC110502141
XR_005038831.1 mRNA upstream 62472 37903148 ~ 37967285 (-) False LOC110502141
TU2067385 other downstream 78753 37759971 ~ 37760248 (-) True G1807020
TU2066735 other downstream 726527 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 902914 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 1260290 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1779233 36057844 ~ 36059768 (-) True G1805927
TU2068246 other upstream 352746 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 368114 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 735190 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1103460 38944136 ~ 38944530 (-) False G1808299
TU2068898 other upstream 1103460 38944136 ~ 38944530 (-) True G1808299

Expression Profile