RNA id: XM_036959261.1


Basic Information

Item Value
RNA id XM_036959261.1
length 3643
RNA type mRNA
GC content 0.58
exon number 27
gene id LOC110502141
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37903148 ~ 37967285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATTCTGCATCTGAGTGTAGGAGAGCGAGAGGCTTGAACTTCCTGTGCAATCTCAGTTCACCCGTTTTACATATACAGGAAGATTTTCGGAGCTGCAAAGTGAGAGGGGAGTGTTTGGTAATTTAAAGAGAAATTCCCCCGTGCATAAACTGTAAATGCGGATTGTTTACATCAGTCGGTCGAGTCGGAGAAGCCATtccttctttccctcctcccttcgCACACTGTGGCGGTGGCGCGACTCCCCCTCACCGCAGATAGTGTCAGTGGAGCTGGCCATGGGGCCCTGATACAGCCCGGGCCCTGACTGAGGTTCTGCGTTGCATCAGAAAAGGAACAATTATTGATGCACGATTCACTTCCCTGACTACTGCATCAACCAAGAGTGACTacaagaggaaagagagaagattTTGAACTGAAATATTATTACAAGATAATTGCATGATCTGATATTCAAGGGAGTGTGTTGATGTGCTGACCAAATTGATCGAGACTATTATGGCTGTTCTAAAACTCGTCGAACAGcctcctctgGTCCAGGCCGTCTTCAATGGAGACCCTGAGGAGATACGCATGCTCATCTACAAATCGGAAGACATCAACGCTCTGgatgcAGAGAAGCGCACCCCGCTCCATGCTGCAGCCTTCCTGGGTGATGCTGAGATCACTGAGCTTCTTATCCTCTCCGggGCACGGGTCAACGCCAAAGACAGTATGTGGCTCACCCCTCTCCACCGTGCGGTGGCATCCTGTAGTGAGGAGGCGGTTCGTGTGCTGATCCGTCACTCTGCTGATGTGAACGCGCGGGATAAGAACTGGCAGACGCCGCTTCACGTTGCCGCTGCCAACAAGGCCCTGCGCTGCGCTGAGGTCATCATCCCGCTGCTGAGCAGCGTCAACGTGTCGGACCGCGGGGGGCGCACCGCCCTGCATCACGCCGCCCTCAACGGGCACACCGAGATGGTTAACCTGCTGCTGGCTAAGGGAGCCAACATCAATGCCTTCGATAAGAAAGATGGCCGCGCGTTGCACTGGGCGGCTTATATGGGACATCTGGATGTAGTGTGTCTGCTTGTCAGCCAGGGGGCAGAGGTCAGCTGTAAGGACAAGCGGGGTTACACCCCACTACACACGGCCGCTTCTAACGGTCAGATCGCTGTGGTCAAACACCTGCTCAACCTGGCTGTGGAGATAGATGAGACCAATGTGTTTGGTAACACAGCTCTGCACTTGGCCTGTTTCAACGGTCAGGATGCTGTGGTCAGTGAGCTGATAGACTACGGAGCTAACGTCAGCCAGCCCAACAACAAGGGTTTCACCCCCCTGCACTTCGCTGCAGCCTCCACCCACGGAGCCCTCTGTCTGGAGTTCCTGGTCAACAACGGGGCTGACGTCAACGTCCAGagTCGGGATGGGAAGAGCCCCCTCCACATGACAGCGGTCCACGGCCGCTTCACTCGCTCCCAGACACTCATCCAGAATGGTGGGGAGATTGACAGTGTGGACAAGGAAGGGAACACTCCTCTCCACATTGCTGCTCGCTATGGTCACGAGCTCCTCATTAACACACTCATCACTAGCGGAGCTGACTGCACaagacgaGGGGTCCATGGTATGTTTCCTCTGCACCTGGCTGCTATGAATGCCCACTCAGACTGCTGCCAGAAGCTGCTCTCCTCAGGAAGGATGTACAGCGTAATGTGTTCCCTCAGTAACGTCCCCTCGTCCTCGGCCCTGTCTGCAGGCTTCCAGATCGACACCCCTGATGCACTGGGGAGGACTTGTCTACACGCTGCCGCCGCCGGgggTAATGTGGAGTGTGTGAAGTTGCTTCTGAGCAGCGGTGGGGACCACAACCGGAGGGACAAGTGTGGTAGGACCTCTCTCCACTATGCGGCAGCCAGTCGTCACTACCAGTGCCTGGAGACCCTTGTGTCGTGTGGGACCTGCATTAATGCCACTGACCAGTGGGGGCGCTCTGCTCTGCACTACGCTGCTGCCTCCGACCTGGACAGAAGGCGACGTCAGGCTCTGGAGCCAGAGAGTGAAGGGGTGCAggcagagaaggagaaagaggctGCACTATGTCTAGAATTCCTTTTGCAAAGTGGTGGTACTGCCTCTCTGAAGGATAAGCAGGGCTACAGTCCTGTCCACTATGCTGCAGCCTATGGCCACAGACACTGCCTGGAGCTGCTGTTGGACAGAGACGAGAGTCACCAGGAGCCCCCAGACTTTCTGGGTGCCAGGAGCCCCCTGCACCTCGCAGCATACCACGGCCATGCACAGGCTCTGGAGGTGTTGCTgcaaggggagagggaggtagaccaGGGGGACGAGGAAGGTCGTACTCCCCTGGCCCTAGCGGCCCTCAGGGGCCACACTGACTGCGTCCACACCCTTCTCAGCCAGGGGGCCTCGCCACGCACCACGGACACCAACAGGGGACGCACCCCGGTACACCTAGCAGtgatgaATGGTCATACGTCGTGTGTACGCCTCCTTCTGGACGACCAGGATAGTGCAGACCTGGTGGACACTATAGACTCTCAGGGACAgACTCCTCTGATGCTTGCGGTGGCAGGGGGACATGTGGATGCTGTGTCTCTGCTGCTGGAGAGAGAGGCTGCTGTAGATACAGCAGACAACCATGGCCTGACCGCCCTGCACCTcgggtTGCTGTGTGGTCAGGAGGAGTGTGTTCAGTGTCTGTTGGAGCAGGAGGCCTCTGTGTTGCTGGGGGACTCCAGGGGCCGAACAGCCCTCCATCTGGCTGCAGCGAAGGGCCACGCATCCTGGCTCGCTGAGCTGCTGAGTATGGCCTGTTCTGAACTGCCCACGCCCCCCCTCCGAGACCACCAGGGGTACACCCCCCTgcactgggcctgctactatgGTCACGAGGGCTGTGTGGAGGTACTGCTGGAGCAGAAAGGTTGTCCCTGTATCGATGGGAACCCCTTCACTCCTCTGCACTGTGCTGTGGTGAATGATCATGAACCCTGTGCCTCACTACTGCTGGAAGCCATGGGATCAGACATGGCCAGCTGTAAGGACGCTAAGGATCGgACTCCACTCCATGCTGCAGCGTTCTCTGGTCATGTGGACTGTGTTCAGCTGCTTCTGGCCCATGATGCACCTGTGGATGCTGTGGACCAATCAGGGCGCAGTGCGCTGATGATGGCTGCAGAGAAGGGAAGAGTCGGGACTGTAGAGGTGCTGCTGACCAGTGCCAACGCCAGCCTGAGGTTGGTGGACCAGAATGGTAACACCGCGCTCCACCTGGCCTGCAGTAACggAAAGGAGGACTGTGTACTATTCATCCTGGAGAGGCTGAGGGACACTGTTCTCATTGGTTCCACCAACGCAGCACTGCAGACGCCCCTCCACCTAGCGGCCCATAGCGGTCTGAAGCAGGCTGTCCAGGAGCTGCTGTCCAGGGGGGCCAGTGTTCAGACGTTGGATGAGAACGCTCCGGTGCGCCCTCCCCAGGTTCCCTCCTGAGAGCCCTACCCAGGGAGGGGAAAAGCTCCCATGGCCCTCGCAGCCCCAAGGCCCCCTCGGACCCCTCTAGCGAGGGCAGTGCCAGTCAAGGCGCCAATGAAAACGACTCGGACTCAGAAACCTTTTGACCCCT

Function

GO: NA

KEGG:

id description
K15503 ANKRD44; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2068058 lncRNA downstream 31051 37872767 ~ 37873860 (-) True G1807588
TU2068053 lncRNA downstream 37974 37864964 ~ 37866937 (-) True G1807587
TU2067466 lncRNA downstream 51279 37851930 ~ 37853632 (-) True LOC110501831
TU2067459 lncRNA downstream 54537 37850101 ~ 37850374 (-) True G1807075
TU2067458 lncRNA downstream 56143 37848033 ~ 37848768 (-) True G1807074
TU2068148 lncRNA upstream 103581 38070866 ~ 38072483 (-) False G1807673
TU2068152 lncRNA upstream 103581 38070866 ~ 38072052 (-) True G1807673
TU2068252 lncRNA upstream 234716 38202001 ~ 38202385 (-) True G1807754
TU2068215 lncRNA upstream 241505 38208790 ~ 38241273 (-) False G1807731
TU2068216 lncRNA upstream 241505 38208790 ~ 38213187 (-) False G1807731
XM_021579670.2 mRNA downstream 44003 37851828 ~ 37860908 (-) False LOC110501831
XM_021579996.2 mRNA downstream 64235 37839001 ~ 37840676 (-) True LOC110502128
XM_036959075.1 mRNA downstream 69739 37834053 ~ 37835172 (-) True LOC110502140
XM_021579995.2 mRNA downstream 73426 37830542 ~ 37831485 (-) True LOC110502127
XM_021579661.2 mRNA downstream 104820 37798979 ~ 37800091 (-) True LOC110501821
XM_021579684.2 mRNA upstream 4927 37972212 ~ 37991465 (-) False LOC110501835
XM_021579683.2 mRNA upstream 4927 37972212 ~ 37995938 (-) True LOC110501835
XM_036959263.1 mRNA upstream 37544 38004829 ~ 38011876 (-) False LOC110501838
XM_036959264.1 mRNA upstream 37544 38004829 ~ 38012137 (-) True LOC110501838
XM_036959265.1 mRNA upstream 62217 38029502 ~ 38063991 (-) False LOC110501839
TU2067385 other downstream 144663 37759971 ~ 37760248 (-) True G1807020
TU2066735 other downstream 792437 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 968824 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 1326200 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1845143 36057844 ~ 36059768 (-) True G1805927
TU2068246 other upstream 226137 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 241505 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 608581 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 976851 38944136 ~ 38944530 (-) False G1808299
TU2068898 other upstream 976851 38944136 ~ 38944530 (-) True G1808299

Expression Profile