RNA id: XR_005038832.1


Basic Information

Item Value
RNA id XR_005038832.1
length 3369
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110501846
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38467191 ~ 38472484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTCTGCAAATGCTCGTGAGGGCGCTCTGATGCTGTCTTGGCCGGCAGCCTTACGAGGGTCAACACGTGGAGACCGTAATAAGCATGTAACCCTTGTTGTCCTCAGGGGCTCTCATCGGCAGCTTAGTCGTTTTGCTTGAAAcgtgagaaaagggtgtttaccTCGTCCGGTAGAGCGGTGTTGGTGTCGGCGACGTGACGCATTCTTTTTGTAATCTGCGATTGTTAGAAGCCCTGACACATGTGCCTTCATCCAAAGTTTTCACATTCTATGATCAGATTTCGTTGTTGGCAATTACCTTTATCTTATGTCAACATGGATTTGATTCGGgtgaatgtattattattatcctGGCAATCTTTCATAGATAGGTGAGGTCACAGTTAAACCTTTACTTAGTGTTTTGCCAGAGGTTATAATGCCCTACATAGAAGTATCTGACCTGACTTTGAACAAAGACACATTTCCCTCCGTACCACAGGACGGCGCAGTAGAGCTTTGATCAACATAACTGTGCTCTTTTCCTCCGGAGAGAACCTAAGCGTCACCAAAGATTTGTTTAACTAACCCTCGTTGTTCTAGCTCTGGCGTCACGTGACAAAGCTGCAAAATCAAAACAGTTCTCTCTATTTATCTGTATAAACAATGTAACCAGCTCCTGAATTCATTTACTCATGTAAGTTAAATAATCAATAGGTCCATCTCTCTTCCAATAACATTGGCGAGAGAAGAACTGCACACGTGTTAATGAATAAACGAAcaagtgagctagctagctaattcatTGACAGATGTTCTGATAATGCCAGTAACCAACCAAAGAAAAGCAACATCAGGAGAGAGATGATGCGGTGTTCTGCTCTTTGACTTTACATCTAATGCAGCAACTGCCTTAATATTACTGGAGCAATAGTAGTATAGCAATCATATCAGTAGTATAGCAGTGTAATAACTAGTGTTATGCAGGTGCCCTTTCTGTTCATTAGTTTGTCTGTAATGTGGaaactgtgtgtttgtggctACTAGCTATATGTCATTATActgttgtgactgtgttgtgttgttgctGTGTCAGGTGCAGGGCACCAACGACAGCAGTGTGCTCAGTAAGGTGTCTGCTGTAGCTCAGGGTTACTTCCTGGATGACTACCTGAAGCAGTTTGTGTTTAAGGAGTTTAGGAGAGCCCCTCTCATCAACAGGTCGCTAAGATAGAAACataacatgtgcacacacacacactcaatagaTTTGTAGAGTTAGAAGGATCTTCCTCtatgtatttgtttgtgtttgtacTGTATCTCTGGTGCAGGGATTACTATGGGGTTACTATGTACGCTGGAGAGCTGTAGACCACTGTGTCAAGCAGTTTCTGTGGCTGACAGAAAGCTGCCCCAGGAGACAGGTAAGCTTAGCCTGGTCCaaggtctgtttgtgctgttttgccAAATCCTCCCCTGTGACGacccccatagtgtcccctcccCCAAGGTCAGCGCTGAGCCCTCTCTCCCTGGTGGTGAAGCCCATGCATGGGGAGCTGTGTGTGGAGGGTCTGAGGATGGCCTCTACCTTTACTGGGTCCTGGGCTGGTGCTGCTCAGTGGGGGTTCAGGCAGAGTGGGTAGAGGGGCTGTCCCCTCCTCCCAGGTGTCCGACTGTATCACACTGTACCATCTGTCCCAAACTGTCCATCTGTCCCTCGGTGGGGAGCTGTGGCGTTTCCACTCCACCCAATCAGAACCCTTTTCAGAGTGAGCTATGACCCTTGTGACCTGCCTGACCCAGTTGCACCTGACAACCAGGCCTCACTGAGGCTCCCCTTGAAGGAGATAGGCTGTGCTGGCAACCTGCCTCAACCAAGACGGAGGCACACTGCGACCATACTGAGGCAGGAAGGTCAGAACTTCCTTTCTGTGTTTGAAGGGCAGAACGAGGCTGAGGATGCACTGTATCTTGATGACCAGCGTTGGACCGAGACTCTTGACGGGTCAACAATGATGGCTCtgattggtggaggaggaaactGCTTCGCCTTTGGGACTCATCACAACCCTCACCCTGTCACTGTGGACCTCAAGCCTGTTCTATAACAATGGTTGCTAGAAGTATTCTTTGTGAGGACATTTTTGTACAGTATCAACTTGGTATTGGAAACCTGAGTCGACCTGTGGCAGTGGAACTGAAGCATCGATAAGCTATCTTGACACCTGTAGAACTCAAGGTCATGGTGACATTCTCTTATTGTTATTAGTTCCTTTGTTATTCGGGCGATTCCAACAGAAAAGATTGCTCCCTCTAGCTTTCACCAAAATGAGTCAGTGGCTGAGTTACACATACAGAAGTACATCTTCCTTTGGGTTGCAGCAGTTCAGGGCCATGGGCTACCTTCCAgccctacacactcactcacacagacacataaaAAAGTCCCAACATATCAGATCTGCTTACCAGACACATTTTTATTTCAGGTGAAACAAAGGACTCACAGTAAAAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAAAAGGATAGGACTCACAGTAAAAGGATAGGACTCACAGTAAAAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAATAggatcaaataacattttattggtcacatccacgtgtttagcagattccttccccagtcgtcattgtttTTGTTTCATATCTGTGTGTTGTTAATGTTTCGGTTCATGTTCCGTTTATTTGATTAAAACACTGACTCTCAGGGCACAGCGTTACAGAATGACGACTCAacaaagggaagcatcagggagtgttttttctgtttttgtgttgaAGGCGATGTTGGGTCCGGGTGTTGGAGCTGGAGCTACCTGGGAGGTCTCAGCCGTTTGTTAACTGGATGAACAGGTCCCCATGCCTCAGCCGAGGCTCTTAGTCCTCAGCCGGTTCGTCAGGTTTCTGCGCCTCAGCGGAGGCGACCGATCCGCTCCGgatccccgggatcgtccctGTGGTTGGAGCCGACTGCGCCGGGTAGGGGATACTGTCACGTATGATCTCTCCGGCGCTCTAGGTCGTCATGCTCCCACGCCTTAGCAGAggtgaccggtccgctcctgatccctgGGATCCTCATCTTGtcggcgtcctgcggctggagccacGCGTCGGGTAGCGGGTACCTGTGCTCCTTCTCCGGCCACCAGGCTGCTCgtttatggcgcacacctgtcaccagcacTACGTGGATTtgcgcataatgacactcacctggactccatcacctccttgattacctgccctatatatgtcaccccctttggtttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2068307 lncRNA downstream 154530 38312255 ~ 38312661 (-) True G1807805
TU2068284 lncRNA downstream 166997 38299184 ~ 38300194 (-) True G1807785
TU2068219 lncRNA downstream 254004 38208790 ~ 38213187 (-) False G1807731
TU2068410 lncRNA upstream 31374 38503858 ~ 38504231 (-) True G1807893
TU2068434 lncRNA upstream 87458 38559942 ~ 38560352 (-) True G1807917
TU2068435 lncRNA upstream 91696 38564180 ~ 38564943 (-) True G1807918
TU2068440 lncRNA upstream 108600 38581084 ~ 38597380 (-) False G1807922
TU2068442 lncRNA upstream 109351 38581835 ~ 38582313 (-) True G1807923
XM_036959273.1 mRNA downstream 16448 38438184 ~ 38450743 (-) True LOC110501845
XM_036959269.1 mRNA downstream 84142 38304468 ~ 38383049 (-) False LOC110502144
XM_036959270.1 mRNA downstream 84142 38304468 ~ 38383049 (-) False LOC110502144
XM_036959271.1 mRNA downstream 84142 38304468 ~ 38383049 (-) False LOC110502144
XM_036959272.1 mRNA downstream 84142 38304468 ~ 38383049 (-) True LOC110502144
XM_036959278.1 mRNA upstream 13337 38485821 ~ 38491102 (-) False LOC110501850
XM_036959277.1 mRNA upstream 13388 38485872 ~ 38491085 (-) False LOC110501850
XM_036959276.1 mRNA upstream 13388 38485872 ~ 38491495 (-) False LOC110501850
XM_036959280.1 mRNA upstream 13388 38485872 ~ 38491495 (-) True LOC110501850
XM_036959274.1 mRNA upstream 48388 38520872 ~ 38726596 (-) False LOC110502145
TU2068217 other downstream 254004 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 272095 38193422 ~ 38195096 (-) True G1807750
TU2067385 other downstream 706943 37759971 ~ 37760248 (-) True G1807020
TU2066735 other downstream 1354717 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 1531104 36935658 ~ 36936087 (-) True G1806393
TU2068420 other upstream 103382 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 471652 38944136 ~ 38944530 (-) False G1808299
TU2068898 other upstream 471652 38944136 ~ 38944530 (-) True G1808299
TU2070925 other upstream 2264164 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 2975415 41447899 ~ 41465647 (-) True LOC110501886

Expression Profile