RNA id: XM_036959278.1


Basic Information

Item Value
RNA id XM_036959278.1
length 2308
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110501850
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38485821 ~ 38491495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACGCGGAGGTGGGAAAAACGTTCCGAGTCATACATTTTGGTTGAGATAAACAGAACAAACCAACATAATcatggtagctagttagctaactctATCGTAACGTCAAAGTGCAAAAGACGAGAAACAATTGAACATCTCGGCACAGAAAAAGAAGGCCCTTACGGGAGTCTACAGCCAATCATCAgccatgaaaatagctgtggaaGGGTGTTGCCATGGAGAGCTGGATAAGATCTATGAGACGATTGGCTACCTGGAGCAGAAGGAGGGGGTGAAGGTAGACCTGCTGCTGTGTTGTGGAGACTTCCAGGCTGTGAGGAACGAGGGGGACATGAAGTGCATGGCTGTGCCGCAAAAGTACAGGCAGATGCAGACCTTCTACAAGTACTACTCTGGAGAGAAGAAGGCTCCGGTCCTGACTATCTTCATCGGTGGGAATCACGAGGCCTCCAACCATCTCCAGGAGCTCCCGTACGGGGGCTGGGTGGCTCCCAACATCTACTACATGGGTTATGCTGGTGTTGTGCGCTACAAAGGAGTAAGGATAGGTGGCTTGTCTGGAATCTTCAAAGGGCATGATTACAGGAAAGGACATTATGAGTTCCCTCCATATAACCCAGAAACCCTACGCAGTGTTTACCACATCAGGAACATCGATGTCTTCAAACTCAAACAGATCCAGATGCCTGTAGATGTGTTCCTGACCCATGACTGGCCTCGTGGGATCTACCATTACGGCAGCACAGGGGAGCTTCTGAGGAAGAAGAAGTTCCTGAGGCAGGAGGTGGAGTCCAACACACTGGGTAGTCCTGCAGCAGCAGAGCTCCTGGCCCACCTGCAGCCTAACTACTGGTTCTCTGCGCACCTCCACGTCAAGTTCGCTGCCCTAATGCAGCACCCGGCCAAAGTTGATGCTGCCCCCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCATACAGGGACTTCctacagATCGTAGAGGTAGCAGACAGGCCAGGATCGTCCCAGGGTCTGGAGTATGATCCAGAGTGGCTGGCCATCCTCAAAGCTACAGACAGCCTGCAGACTGTCAGCCCTAATTACTGGAACCCCCCGCAGAACAATGGCCTGCACACAAGGTGGGACTTCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGACCTGGGGGGTGAACTGTCCATCCCTGACAACTTCTGCCTGACCGTGCCAGCTTACGACCCTGCCCGGCCACAGCCCCATGCCCACCCCAGCTACAGCACCAACCCGCAGACCACCGAGCTCTGTGCCACCCTGGGTCTCAGAGACATCTATGCCCAGGTTGGGCAGGGAGGGTATGGGGGCCAGATAGGCACCCCAGAGCTGGAGGATGATGAAGTCCAGAGTGGAGATGAACCCAGTGAGTACCCTAGTGACACCTCAGGCCTGTCCAGCTCCTACAACCCTGATGAGATCACCATAGAGGAtgagtgggaggaagaggaggagggaggagagaaagagggaagggggaAGAGCCCTGATGCAGTGGTCCCAGAGGGGGAAGCGGGGGAGGCAGGAGGGAGACGGGACTCGGGGCCCCCCTCTAGAGAGCTGCCCCCCAGCCGCATGGTTCTGACCATGCCTGAGCCCAAATCAGACCCCGCTCCTCCCTCACGCCTGTCCCTCaacctacctcctccctctcactcctcACCTccggaaagggaggaggaggaggaggagccccATGTCCGGATCCCTAAGCGCACCAGTGGGGAGACGGGGGACCCTATCAGTACAGGCAGCACCCCTAGGATCAAACGCAGGAACCAGGTCATCTACACTGCAGTGGACGATAATGAGAGTGAGGACTAGGGCTGGAACTTGACCCAGGTTTCAGGGGGAAGTCCGTGGGAACTGTTGTCAAATAGAAGATTCTTATTATCTCCTTTTTATATTGCTATTGTCGTTCTTCAATGCAAACcaacagagttttttttttttttagtataGGGAGAGTGGAGAATCCCATgatggaaatgtatttttttaagtcTGTTCAGTTCCTTTTTTAAATTATGAAATAAAGAAAATGGTGattttaagaaaaaaataagttGAATTTCAGATGAGGCACACTGTTTCCTCAGTAGTTTTCCACTGTGGGTCAACTTCAAAAGGGCTGTGTTGGGAAACAACAAAAGGTTAAGAACATGAATATGTTTGTACACCAAATAGTCATAAACCAATTTTGAACATGAACCTTATGACATCTTTACTTTAGCCAGAAGTCAAATTCTTGCCAAAGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2068307 lncRNA downstream 173160 38312255 ~ 38312661 (-) True G1807805
TU2068284 lncRNA downstream 185627 38299184 ~ 38300194 (-) True G1807785
TU2068219 lncRNA downstream 272634 38208790 ~ 38213187 (-) False G1807731
TU2068410 lncRNA upstream 12756 38503858 ~ 38504231 (-) True G1807893
TU2068434 lncRNA upstream 68840 38559942 ~ 38560352 (-) True G1807917
TU2068435 lncRNA upstream 73078 38564180 ~ 38564943 (-) True G1807918
TU2068440 lncRNA upstream 89982 38581084 ~ 38597380 (-) False G1807922
TU2068442 lncRNA upstream 90733 38581835 ~ 38582313 (-) True G1807923
XR_005038832.1 mRNA downstream 13337 38467191 ~ 38472484 (-) True LOC110501846
XM_036959273.1 mRNA downstream 35078 38438184 ~ 38450743 (-) True LOC110501845
XM_036959269.1 mRNA downstream 102772 38304468 ~ 38383049 (-) False LOC110502144
XM_036959274.1 mRNA upstream 29770 38520872 ~ 38726596 (-) False LOC110502145
XM_036959286.1 mRNA upstream 383312 38874414 ~ 38892741 (-) True ccnyl1
XM_021579702.2 mRNA upstream 408382 38899484 ~ 38929741 (-) False LOC110501854
XM_021579703.2 mRNA upstream 408382 38899484 ~ 38929741 (-) False LOC110501854
XM_021579704.2 mRNA upstream 408382 38899484 ~ 38929741 (-) True LOC110501854
TU2068217 other downstream 272634 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 290725 38193422 ~ 38195096 (-) True G1807750
TU2067385 other downstream 725573 37759971 ~ 37760248 (-) True G1807020
TU2066735 other downstream 1373347 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 1549734 36935658 ~ 36936087 (-) True G1806393
TU2068420 other upstream 84764 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 453034 38944136 ~ 38944530 (-) False G1808299
TU2068898 other upstream 453034 38944136 ~ 38944530 (-) True G1808299
TU2070925 other upstream 2245546 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 2956797 41447899 ~ 41465647 (-) True LOC110501886

Expression Profile