RNA id: XM_036959076.1


Basic Information

Item Value
RNA id XM_036959076.1
length 1839
RNA type mRNA
GC content 0.57
exon number 5
gene id LOC118943588
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39437199 ~ 39441516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggagatcCCACGAGAGTACACCCACGGTCATGCGGAGTACACCCACGGTCATGCGGAGTACACCCACGGTCATGCGGACTACACCCACGGCCATGCGGAGTACACCCACGGTCATGCGGAGTACACTCACGGCCATGCGGAGTACACCCACGGTCATGCGGAGTACACCCACGGTCATGCGGAGTACACCCACGGTCATGCAGAGTACACCCACGTGCCCCCTAGTGGCGTGTCCATCATGAATCATCCGGTGATGCTGAGGTGTCGGTGGAGAGTACACCCACGGTCATGCGAAGTACACCCACGGCCATGCAGAGAACACCCACGGCCATGCAGAGTACACCCACAGCAATGCGAGTACACCCACAGCAATGCGGAGTACACCCACAGCAATGCGGAGTACACCCACAGCAATGCGGAGTACACCCACAGACATGCGGAGTACACCCACAGCAATGCGGAGTACACCCACAGCAATGCGGAGTACACCCACAGACATGCGGAGTACACCCACGGCCATGCTGAGGTGTCGGTGGTGAGCGGTGACCCTGGCCAGGCtgaggatgaaggggaggagggggctgCTGGTCAAACAGGACATCCTGATAGAGAGTCACCCCAACAGGACGCTCAGTGTGAAACCCCCCCCAGCCTCCGTATGGACCAGCTGCACTGGCAGTGTGTGGTGTTCAGAGGGCTTGTTCAGAGCGACAGCCTCCCTGACCTCACAATGCCCACACAGACAACAGTGTCTTCAATGACAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCCCCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCCCCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCCCCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGCTCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGTCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCCCCGCTGCCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACTGACATCCACAACATCACCGCTGTCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCCCCGCTGCCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGTCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGTCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACCGCTGGCCAGAACCACCTGTTCACACCCCCATCACCAACATCCACAACATCACGCCCACACACTTTTAACATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069177 lncRNA downstream 63826 39373168 ~ 39373373 (-) True G1808510
TU2069147 lncRNA downstream 91157 39345841 ~ 39346042 (-) True G1808482
TU2069112 lncRNA downstream 126710 39310257 ~ 39310489 (-) True G1808451
TU2069031 lncRNA downstream 207343 39166420 ~ 39229856 (-) True G1808385
TU2069005 lncRNA downstream 313645 39108339 ~ 39123554 (-) True G1808367
TU2069304 lncRNA upstream 10050 39451566 ~ 39452483 (-) True G1808627
TU2069305 lncRNA upstream 13005 39454521 ~ 39455134 (-) True G1808628
TU2069624 lncRNA upstream 132964 39574480 ~ 39575918 (-) True G1808911
TU2069689 lncRNA upstream 259692 39701208 ~ 39702525 (-) True G1808969
TU2069724 lncRNA upstream 311473 39752989 ~ 39753230 (-) True G1809004
XM_036959592.1 mRNA downstream 733 39429672 ~ 39436466 (-) True LOC110502146
XM_021579706.2 mRNA downstream 282429 38998682 ~ 39154770 (-) True klf7b
XR_005038835.1 mRNA downstream 457173 38978507 ~ 38980026 (-) False LOC118943609
XM_021579703.2 mRNA downstream 507458 38899484 ~ 38929741 (-) False LOC110501854
XM_021579710.2 mRNA upstream 148513 39590029 ~ 39680169 (-) True ramp1
XM_036959294.1 mRNA upstream 241704 39683220 ~ 39731113 (-) False LOC110501861
XM_036959297.1 mRNA upstream 241704 39683220 ~ 39731113 (-) False LOC110501861
XM_036959295.1 mRNA upstream 241704 39683220 ~ 39731114 (-) False LOC110501861
XM_036959296.1 mRNA upstream 243694 39685210 ~ 39731114 (-) True LOC110501861
TU2068897 other downstream 492669 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 492669 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 824912 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 1224012 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 1242103 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 1295132 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 2006383 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 2163458 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 2945306 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 3163187 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile