RNA id: XM_036959295.1


Basic Information

Item Value
RNA id XM_036959295.1
length 3962
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110501861
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39683220 ~ 39731114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGAGGGGAATTGTGTGCTTTACCTCCCACTTCTCTTGGGACTTGTGAAAATTGTCTCGCGTATCGAGTAGGAATTATTGTAACGCTAGTAAGACTACATGTCAACCATGGACACGTATTAGTTTTACTTTGTGAAGGTGGAACAGGCAAGTGGTTTGGTTATTATTTTAGATATCGGCAAGTATTTTGTGAGTATTGCTTATAGTATAGGACTTTCGGATCTACAAGTGGCCATCGGCGACAGCAGCAAGTGTGAATGTCGGACTTGTTTCATCTGTCGCTTCAGCATCCTCACAATAGGTAGTGTTCACCAGGCCCAACCATGCTGAGTTTCCTCCGCCGAACGCTGGGCCGGCAGTCCATCCGTAAGCATGCTGACAAGGCCCGGTTGAGAGAGGCCCAGCGGGCCACCACACACATCCCTGCTGCCGGGGACTCCAAGTCTGTCATCACCTGCTGTGTGTCAATGCTGGACGGCACAGACGTCAGTGTGGACCTAGCGaAAAAAGCCAAGGGTGAGGAGCTGTTTGACCAGGTCATGTACCATCTGGACATCGTAGAGAAGGACTACTTCGGACTGCGCTTCATGGACTCTGCACAAGTACCGCATTGGCTTGACATTACAAAAAGCATAAAAAAACAAGTCAGAATCGGACCTCCATACTGCCTTCACATGAGAGTTAAGTTCTACTCCTCAGAACCCAACAACCTGCACGAGGAGTTGACCAGATATCTATTTGTATTACAACTAAAGCAAGACCTCCTCAGTGGCAAGTTAGAATGCCCTTTGGACACAGCAGTGGAACTGGCAGCCTTCTCGTTACAAGCTGAGCTGGGAGACTGTGACCCTGCGGAGCATGCTCTGGACATGGTGTCTGAGTTCCGCTTCATGCCAGAGCAGACGGAGGCCATGGAGCTGGCCATCTTCAACACCTGGAAGGAGTGCAGAGGCCAGATGCCGTCGCAGGCAGAGATTAACTACCTGAACAAGGCCAAGTGGCTGGAGATGTATGGGGTGGACATGCACATGGTCAAGGCTCGAGATGGTAATGAATACCAGTTAGGACTGACTCCCACTGGAGTGCTGGTGTTTGAGGGAGAGACCAAGATAGGCCTGTTCTTCTGGCCCAAGATCACCCGTCTAGACTTTAAGAAGAGCAAGCTGAccctggtggtggtggaggaggatggagaagaggatcaggagagagaagaggGCAAAGAGCAGCAGCACACGTTTGTGTTCCGTATGGACCACCCCAAGGCCTGTAAGCACCTGTGGAAGTGTGCTGTGGAACACCATGCTTTCTTCCGGCTCCGCGGCCCCGTCCAGAAGGGCTCCGCGCGCTCCGGGTTCATCCGCATGGGGTCACGCTTCCGCTACAGTGGGAAGACTGAGTACCAGACCACCAAGGGCAACAAAGCCAGGAGGTCAGCATCGTTTGAGAGGAGGCCCAGCCGACGCTACTCCAGGAGGACCATGATGAACCGGGGAGCCAACAAACCCCAGGATCACAACAACGGAATGAGCCCCAACACAGATGCCAAGcCCCTCCACATCAGAAGCCCCTGGTCCCTGCCCGTGGTCAGCCCTGCATCCTCAGGCTCCACCAGCAGACCTATGAAAATCGAAACCCTCCCCAGGAGTCCTGGCGGTGGCCAATCGGAGAAGAGGAGcATGGCCTTGCCACTCGTAGCCGATCTGCTGGAGACATGCGTTAATGACGTCACCCATACACCCGTTCCCATGGCGACAGCAGGCCTGTCTGAGGAGACTGAGGCAGCCATGCTTAGCCCCGTCTCCAGCCTCACAGGGGAGGAGAAAGTCTCTCTTGCCGAGGCGGCGGCGCGGCTGAAGCAGCTGGAACTACACAGtctctcgctccctgtccctTCCAGAGCCAACCTCAACATGAACAACCAGGAGGATGTGGTGAAGCTCACAGAGGAGTGTCTGAACAGTGTGGCTAGCAGCTCTGTGCCTTCTCCACTTCGCCCCCCAGAGGACCTGAAGAGGAACATTATCAAAGCCCAGGCACATGCTGCCCTCAAGAGCTCCCTGGAGGAGCACGTTGTGATGGGGGACAAGAACACCAATGTACAGGAAGCTGCAGGCAGGCTGAAGGTGCGTAGTGGCCGTATGGGCAGCaactcctccctgtctctaactGGACGTCCCGAGAGACAGGAGTCAAGGGACCTCCTCAAACCCACACTGCTGACCACAGCTGGGGCCAGTGTTGAGATGTTGGCTGTGGATCTCGTGCAATCAGCACCTATGATGCCCCTTGAAATACTTAACGGAGGGCAACCAACAAAGGCCGAACCTGAGGAGCTAAAGATGCCCACCCCTCCACCACTGCGGGCCCCGCTGAGCAGTAACCTGATAGACTTCTCAGACCCAACCCCAGTATTAGCGCCATCATCAGTGCAATCCAAGCCCATGATATCACCTCGCTGGATCATCCCTGCTGCTGCAACCGCCGCCCCTCTCCAACCTGAAGGGGGGGCTCTCACCCCAGCCCTgcacccccatctctcctctcaaaTGCACAATGTGATTGACACCAGCATTGTGGCCCAGCCACCCAAAGAGCACGGCACCAAGCACAAAGGTCTGTTGACCACTGAGCTCTGAGTGGGAACCAGGGAGGGAGCTAGCTTCTACCCTCCTCACAACGAATACTTCCTACTCCTGGTGTTTCCAAACTAGGGGACTACTTCCTACCCTGAGCACATTCATCTCCTACTGCATTCCCAAACCTGGGGGAAGTTCCTACCCTAGTGACAACCAGTATCTCCTACTGCGTTCCCAAACAATTCCCAAACCAGCAGCAATCAAGAGATTGGAATTCCTCGTCTCACTCTATTCCAGTTTGGAGGAGTGTTTTTAGTTTAGTACCACAGTTGGTTCACTGCTTCTTGTCATAAGCATTCCTACAAAGTGCACAGACTcccttttagaaatgtttaaagCAGGAAGGGACTGCAATAAGTGCTAAGGAAGAGGACATCTGTTCCTCAAGCCACTGTATTACATTGGAGCACTGGACCTGAACTCTGAGAAGATATGAAACAATGACTTTCTACTGACGGTTTTtagtcctgttttttttttattttttttatttaaagtcATACAGAGTGAATCAATCAAGTACCAATGTTCAGTTAGGACCTGGTGCTCACTAGACGTTTCTGAATCTGATTTAAGACTCCGTTATCAGAGACAACAGCAATATGTAGAATGCAGGCATGAATTTAGCCACATCTAAAATGTTATTCCTATTTTGTATCCATATAAAAAcgctgtagctacaacctgccttaAGCTAGCAGAATGTTAAATTATGATCGCATAACTTTACACAGTAAGgaaatactaccactactattactaatactaccactattactactgtaTCTAGGCCTAAACTGTACTTTAGTTTTTCATCTTACTGAGTCCACTGCTTACGActggagtgtctgtgtgtgatggtaATATCTAATCATGTAGTCTTGACACTGTTTCTGGCTGTGGTCATCAATGACAGGGGACATGACTCATAGGCCTATTTCCTCTGTCAGCCTATCACAAACTGGCTCTCCATTGGTTCTTTTCCACACTAAGCCAATCACATACAGGATCTCTGGTGGTAGGAAGTTGTCAGTCAACTGTATTATTCACTAACGTAAGATGTtattaaatgtattttagatATCAGATGGGCGGTAGATCAGAAGTAGGTATTTGCGAGACGATGTGCAGCAGAGGTAAAAGCAGAAGACCTTTTCGAATACAGTTCATTTGAACAAGTGATCTGTGAACAACACCCATCTCAACGGAAAGACTTAAAATACATcacgtttagttttttttaacTTAAAATAGCCACTCTGAGAAGATgtggtgttctctctctgtgtcatgaatataaactcagcaaaaaaagaaatgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069624 lncRNA downstream 107302 39574480 ~ 39575918 (-) True G1808911
TU2069305 lncRNA downstream 228086 39454521 ~ 39455134 (-) True G1808628
TU2069304 lncRNA downstream 230737 39451566 ~ 39452483 (-) True G1808627
TU2069177 lncRNA downstream 309847 39373168 ~ 39373373 (-) True G1808510
TU2069147 lncRNA downstream 337178 39345841 ~ 39346042 (-) True G1808482
TU2069724 lncRNA upstream 21875 39752989 ~ 39753230 (-) True G1809004
TU2069734 lncRNA upstream 39333 39770447 ~ 39770812 (-) True G1809012
TU2069759 lncRNA upstream 78207 39809321 ~ 39810000 (-) True G1809034
TU2069791 lncRNA upstream 145837 39876951 ~ 39877280 (-) True G1809065
TU2069835 lncRNA upstream 193573 39924687 ~ 39927164 (-) True G1809109
XM_021579710.2 mRNA downstream 3051 39590029 ~ 39680169 (-) True ramp1
XM_036959076.1 mRNA downstream 241704 39437199 ~ 39441516 (-) True LOC118943588
XM_036959592.1 mRNA downstream 246754 39429672 ~ 39436466 (-) True LOC110502146
XM_021579706.2 mRNA downstream 528450 38998682 ~ 39154770 (-) True klf7b
XR_005038835.1 mRNA downstream 703194 38978507 ~ 38980026 (-) False LOC118943609
XM_036959298.1 mRNA upstream 5315 39736429 ~ 39847994 (-) False LOC110502147
XM_036959300.1 mRNA upstream 5315 39736429 ~ 39847994 (-) False LOC110502147
XM_036959299.1 mRNA upstream 5315 39736429 ~ 39847995 (-) False LOC110502147
XM_036959301.1 mRNA upstream 5315 39736429 ~ 39847997 (-) True LOC110502147
XM_036959303.1 mRNA upstream 119741 39850855 ~ 39852972 (-) False tmem177
TU2068897 other downstream 738690 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 738690 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 1070933 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 1470033 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 1488124 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 1005534 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 1716785 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 1873860 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 2655708 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 2873589 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile