RNA id: XM_036959300.1


Basic Information

Item Value
RNA id XM_036959300.1
length 3525
RNA type mRNA
GC content 0.54
exon number 27
gene id LOC110502147
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39736429 ~ 39847997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGGAGATGGCGCCGGTACGTTGCTATGCTGTTGCCTCTGCTGCATTCAGCGTGCATTGACAACGGACTCCGCTGAGAAAGTCAGAGACGCTATTCGGAAATCCGGAATACACTCCCCCCCCCAACATTTATGTCGCTCATACCCTCTCATTTACAAATCAAAGGAATTGTAAATATCATTCACTCGGTCTGAGATGCCTGCTGGTTCGCTGTAGCCAATGGTTGCTGTATCTTGTCTGTGGATTATTCGTCGCCGAGCAAGTCGCGGATTCAAACTAGTAAAGGGCCCGCAGACAGTTGAATGTATGAAGCTGAAGGATCGGAGTGATAAAAATGAGGTTTTGTCGGAGTTCCCAGCGGGTGAACTGAACTTGGATTTTCAGTCCCTCACCCTAAACTCATTTCCCGTTGTAAGAAAACCATATTCCTTAACTGGACGCCTCTGGAACTGTTTATGACGACCCTGGTTGGACCGTAATGACCGCACGCTTCCAGTTGCCTGCTGGCAGATCTTACAATGTCCGGGCGTCGGAGCTGGCACGCGACAGGCAGCACACTGAGGTTGGCTGCAACATTCTTCTATTGGACAACACTGTCCAATCCTTCAAAGTTAATAAGCACAACCAGGGTCAGGTCTTACTGGAGGAAGTGTTTAAACACCTGGAGCTGACAGAGAGGGATTACTTCGGCCTGCATCTGTCCGACGACTCCTCTGACAGCCCGAGATGGCTGGATCCAAACAAACCCATCAGGAAGCAACTTAAACGGGGATCGCCTCATAATCTGAGCTTCAGAGTGAAGTTCTTTGTGACCGACCCTAATAAACTTCAGGAAGAGTACACTAGGTACCAGTATTTCCTCCAGCTCAAACAGGACATCCTGACTGGAAGACTGCCCTGTCCACACAACACTGCCGCACTCCTGGCGTCCTATGCTGTTCAATCTGAGTTGGGAGACTACAGTGACTCGGATCATGCTCCTGGATACCTCTCAGAGTTCTGCTTCATCCCCAACCCACCACAAGGGTTCCACAAGGAGGTCACCAAACACCACCAACAGCACAGTGGTCTGTCTTCTGCCCAGTCAGAGTTTAATTACCTGAACACAGCACGGACGCTGGAGCTGTACGGAGTGGAGTTGCACTATGCAAGGgatcAACGCAACACTGAGATTTTAATTGGGGTGATGTCAGCAGGGATCGTGGTTTACAAGAACAGGGTACGAATCAACTGCTTTCCCTGGTTGAAGATTGTGAAAATATTGTTCAAGTGCAAACAGTTCTTCGTTCAGCTCAGGAGAGAAGTGAATGAGACGAGGGAGACCTTGCTGGGGTTTAACATGGTGAGCTACAGAGCCTGTAAGAACCTATGGAAGACCTGTGTAGAGCATCACACCTTCTTCCGTCTGGACCGGCCCGTTCCCCCTCAGAAGAACTTCTTTGCCCACTATTTTACCCTGGGCTCCAAGTTTCGTTACTGCGGGAGGACCGAGGTGCAGTCGGTGCAGTATGGCAAAGAGAAGGGGATCAAGAACAGGGTGTTTGCCAgGTCTCCCAGTAAGCCCATGGCCAGGAAGTTGATGTGCGGGACAGACTGGGAGGCGGTGAGCAGGAACAGCCTATCAGACGAGAGGCTGGAGACCCAGAGCCTGCCTACACGCTCCCCACCCGGTACCCCTAACCAcCGGAACTCGTTGTTCGTACAGGAGGGGACGCGGATGCGCCCGTTGTCGGTTGGGCACCTGGTGGACCACATGATCCACGCCTCGCCTAGTCTCCCCGTCTTCTCCAATCACAAATCAGCGTCCTCCACCCAGGCCAACTCTATCAGTCTGGACTCCAGCCCctccccaGAGACAGTAGATGGTCGGCCCCCGGCCCTGCCTCCAAAACAGTCCAGGAAGAACCTGAGCCAGATCATCCAGGCCCACTCCCAGCAGAGTCTCCTTGACAACCACATCAACGAGATGTACGATGTTCCCTTGGCAACCGACAAGACCACGTTGAATGGTGTTGTCCCTCACGACAATCTGGTCCTGGTCAAGATGAGGCCAGATGACAACAGACGATTTGGCTTCAACGTCAAGGGTGGAGCTGATCAGAAGGTGCCCGTCATCGTGTCTCGTGTGGCCCCTGGGACATCGGCTGACCTGTGTGTCCCTCGCCTGAACGAAGGTGACCAGGTGGTTCTGATCAACGGTCGAGACATCTCGGAGCACACTCACGACCAGGTGGTCATGTTCATCAAGGCCAGCTGTGAGAGCCACTCAGGAGAGCTCATCTTATTGGTCAGGCCCAATGCCATCTATGACATGGTGGAGGAGAAGCAGGAGACTGAGCCAGACTTCCAGTACATCCCAGAGAAGTGTCCCCAGGACCCCAGTCAGCTGGACCAGGACGCCTGGAGGGACTCTATGAACACCCTGAAGGAGGGTCTGGTCAGCGGGGAAGTACTAGCCCAGTTTGATCAACTCTACCGGAAAAGTCCTGGAATGACAATGTTGTGTGCCAAATTACCtcaaaacatttccaaaaaccgCTACAGAGACATCTCCCCCTATGACGCTACACGGGTCATTCTGAAAAGCACAGATGACTACATCAATGCAAATTACATCAACATGGAGATCCCAGCATCCAGCCTGATCAACCGGTACATTGCGTGCCAGGGCCCGCTGCCCAACACATGCCCAGACTTCTGGCAGATGACCTGGGAGCAGAGCTCCTCCATGGTGGTCATGCTCACCACCCAGGTGGAGAGGGGACGGGTAAAGTGTCATCAGTACTGGCCCAACCCTGACAGCACTGCCTCGTACGGCCGCTTCCAGCTGGCCTGTCTCACCGAGGAGGGTAATTCTGCCTTCCTGGTCCGAGACATGACCCTGACTCACCTCGAGAGCGAGGAGGTCCGGGAGTTGACCCAGATCCAGTACGTGGCCTGGCCGGACCATGGCGTCCCCGATGACTCCATGGACTTCCTGGACTTTGTCAGCCTGGTGCGAAGCAAACGAGCCGGCAAGGATGAGCCCATGGTGGTCCACTGCAGCGCAGGGATTGGCCGAACGGGAGTTCTCATCACCATGGAGACAGCGTTGTGCCTGATGGAGTGCAGTCAGCCCATCTATCCATTAGACATAGTCAGAACCATGAGGGACCAGAGAGCCATGATGATTCAGACACCTAGCCAGTACAAGTTTGTGTGTGAAGCCATCTTGAGGGTCTATAAGGAAGGCCTGGTCAAACCCCTGAAGCCCACCCTTtaccagagagaagaagaaaatggaGGAGAAgcagtaggagaggaggaggaagaagaggaggaagaggatgttaGCGTTAGTGTTAGCGCTAGTGTGACCAGTGTGACGAGTGAGACTAGCGCAACCAGCGATTGCCCTGAACCCTGACCCCTTTGACCTGACCTGGGTCAGCGCAGCGCCAGGGAGGTGGAGCCCTGGTTGCCATGCTTACCGCTATGGGCCGAGGAGAGAACAAAGCACTGTTGCACTTTACGCcgtcaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069689 lncRNA downstream 33904 39701208 ~ 39702525 (-) True G1808969
TU2069624 lncRNA downstream 160511 39574480 ~ 39575918 (-) True G1808911
TU2069305 lncRNA downstream 281295 39454521 ~ 39455134 (-) True G1808628
TU2069304 lncRNA downstream 283946 39451566 ~ 39452483 (-) True G1808627
TU2069177 lncRNA downstream 363056 39373168 ~ 39373373 (-) True G1808510
TU2069791 lncRNA upstream 28957 39876951 ~ 39877280 (-) True G1809065
TU2069835 lncRNA upstream 76693 39924687 ~ 39927164 (-) True G1809109
TU2069841 lncRNA upstream 81521 39929515 ~ 39929808 (-) True G1809115
TU2070038 lncRNA upstream 162729 40010723 ~ 40011196 (-) True G1809296
TU2070039 lncRNA upstream 164767 40012761 ~ 40012999 (-) True G1809297
XM_036959295.1 mRNA downstream 5315 39683220 ~ 39731114 (-) False LOC110501861
XM_036959296.1 mRNA downstream 5315 39685210 ~ 39731114 (-) True LOC110501861
XM_036959294.1 mRNA downstream 5316 39683220 ~ 39731113 (-) False LOC110501861
XM_036959297.1 mRNA downstream 5316 39683220 ~ 39731113 (-) False LOC110501861
XM_021579710.2 mRNA downstream 56260 39590029 ~ 39680169 (-) True ramp1
XM_036959303.1 mRNA upstream 2861 39850855 ~ 39852972 (-) False tmem177
XM_021579711.2 mRNA upstream 2861 39850855 ~ 39853369 (-) True tmem177
XM_036959077.1 mRNA upstream 112437 39960431 ~ 40027153 (-) True LOC110501865
XM_036959304.1 mRNA upstream 236463 40084457 ~ 40170139 (-) False LOC110501866
XM_036959305.1 mRNA upstream 236463 40084457 ~ 40170141 (-) True LOC110501866
TU2068897 other downstream 791899 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 791899 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 1124142 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 1523242 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 1541333 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 888654 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 1599905 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 1756980 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 2538828 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 2756709 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile