RNA id: XM_036959303.1


Basic Information

Item Value
RNA id XM_036959303.1
length 1540
RNA type mRNA
GC content 0.50
exon number 2
gene id tmem177
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39850855 ~ 39853369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTTATCGTTATTTTATTGAGATTTCTGTGCTAGCTATGCTAAccaactagccagccagctaacataaTAATCTGGCTTCTAGTTGCACACGTATCCATTGCATTTTGGATTTGACCAACAGGATAACATAATTGCCAATTGGAACATTAGTGTGAGACTTTGTTACATTTTCAGCAGACGCGTTTATCCAGAGCGATTAAGATCCATCCCTCTGAAGTCTGTGTCTAACAGATTACGACCATGGCGTCTCCATTTCTGAAGTATGCCGTGATGGTACAGAAGTACCGGACGCCGCTGCTCATTGCTGGGTGCAGTGGGGTGTTTGCGGCCCAAATGTTCTACCACTTATTCCCAGAGAATACTTATAGGAAGCTGTATCAGGCCTGGAACAAAGGAGAACCAGCCAGCCTTTCTGAGAAGCTGGAGAGCCTCTTCAAACAGGTGCTGAAGGATTCTGATGTGGGCGCCCCTGATGGTTATAGTGCCTTCGCGTCGTTTGGCTTCCACCCTGTTGGGGCTGGCGTACCCTGGCTTCCCTCCGGTGCCCAGATTGGCATCCCTGCCAACTTCAACAGCACATTGGACGACCCTGCTGGCATCACAAACCGCAGCATACTCATCAATGGCGAGAAGGTGGAGTGGGACAGTGTCATCGGCACGGCCCTGAAGGATGCTCTAGTGTTCTCCCCAGAGGCTCAGAAGTTTGCCGTGGCGAGGGAAGTAGCTCGTCTTGAGGTGGGCGGGCCTGTGCTGAATGCGGCTGTAGCTCCATTCTGCTTGGCCGGAGTGATGGTCTACTCGGTGACCCTGAAGCAGATCTTCAGGCTCCACGTTGGGCCTGTGATCTTCAGGGGCGTAGTGAATGTTGTGGCGCTCGGCCTGGGCGCTGTCTCTTACTTCCTGACTTCCGACGCTGTCAGCCAATGGCTGGACTACAAATCAGACCGCCGTGCTGCAGGCCTGTCCAAGATCTATGCCAAGGGAGGGGTGGAGTTCTACAACAAGATCCTCTCCCGGAACAAGACGCTACGTTCGCTGATGGGCCAGAAGGGGGAGGAGATGTACGCGCCCAGTGGCAACCTGTTCCCTGCTCACCTGCTAAGACTGAAGCACGCTCCCTACACCTCCAGGAGGGATGGCATTGTGGGCCTACTCAAGGAAGAGAAGGCCTAAAAAGGACATTGGAAGCCCAGTAATCTCCGCACCAAGAACCAAATATCACGTGAGCTTTGACCTCTGGCCAGCTACTTGTAAAGTCTGACACGAGACTGGAAGCCCAATGCTGTTTGTGCTAGTTTTCCAACAGGTATTATTTATGAAATCACAATTACTGTGAGGAAAAAGGAAATTTCAACCACATGTAACATTGCCTGAATAATGGCAGTTATACTTGACCTTGTTACTATCGTTTCTCTTATCAGTGACCTCAATTTGAGCACAAATTTGCCTAAAATTGGTCTACATGGTGAACCTGCACTTTTGTGTTGTAAAATACATCAGGGCAAGGCGCAATAAAAATATTTCATAACAATACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069759 lncRNA downstream 40855 39809321 ~ 39810000 (-) True G1809034
TU2069734 lncRNA downstream 80043 39770447 ~ 39770812 (-) True G1809012
TU2069724 lncRNA downstream 97625 39752989 ~ 39753230 (-) True G1809004
TU2069689 lncRNA downstream 148330 39701208 ~ 39702525 (-) True G1808969
TU2069624 lncRNA downstream 274937 39574480 ~ 39575918 (-) True G1808911
TU2069791 lncRNA upstream 23979 39876951 ~ 39877280 (-) True G1809065
TU2069835 lncRNA upstream 71715 39924687 ~ 39927164 (-) True G1809109
TU2069841 lncRNA upstream 76543 39929515 ~ 39929808 (-) True G1809115
TU2070038 lncRNA upstream 157751 40010723 ~ 40011196 (-) True G1809296
TU2070039 lncRNA upstream 159789 40012761 ~ 40012999 (-) True G1809297
XM_036959301.1 mRNA downstream 2858 39736429 ~ 39847997 (-) True LOC110502147
XM_036959299.1 mRNA downstream 2860 39736429 ~ 39847995 (-) False LOC110502147
XM_036959298.1 mRNA downstream 2861 39736429 ~ 39847994 (-) False LOC110502147
XM_036959300.1 mRNA downstream 2861 39736429 ~ 39847994 (-) False LOC110502147
XM_036959295.1 mRNA downstream 119741 39683220 ~ 39731114 (-) False LOC110501861
XM_036959077.1 mRNA upstream 107459 39960431 ~ 40027153 (-) True LOC110501865
XM_036959304.1 mRNA upstream 231485 40084457 ~ 40170139 (-) False LOC110501866
XM_036959305.1 mRNA upstream 231485 40084457 ~ 40170141 (-) True LOC110501866
XR_005038968.1 mRNA upstream 430433 40283405 ~ 40284842 (-) True LOC118943637
XM_036959321.1 mRNA upstream 598625 40451597 ~ 40494774 (-) True LOC110501872
TU2068897 other downstream 906325 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 906325 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 1238568 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 1637668 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 1655759 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 883676 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 1594927 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 1752002 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 2533850 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 2751731 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile