RNA id: XR_002470266.2


Basic Information

Item Value
RNA id XR_002470266.2
length 7655
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110501882
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40942404 ~ 40988211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTCCAGCTGTGGCGCATGCGCAAtccatctctcccatctttcTATTCCCAACAAGCTCGAGAGAAATCTAGCAGTGGCACTTGTACGTGGGAGCGCTTTAATGTATATTTTTCAAAGGAAAAGCCAACCTGAACCTCttcttcttttttatttttacatttctcTACATATAATCCCGAAAAGCAAAATGTGAACTGTTGAAATGGAGGGCATGGTATTTTGGATATGCTAAACCTTATTTCTGACTCTCAAGCCTCTCAGCAACAGACAGCCTGGTGTCTGTCTCAATTTTGGCCCTGGCTCGACTGACATTTCTGCAAAGAAGGGCTTCGGTTCATGTTGTTATTGAACTAAATTCTCCGTGTCGTGTTTTTTGTCTTCTGAAATGGGAAGCTATAAAGGTTGGAATGTATGGGACAGTGGCTGCTTTAATCCATTATCCTCTCTGGGATGATGTAACGCTGACATAACCTGCAACATGAGGAGTTTTAAGGTGCCAGTGGCAGTTAGTACCAGCCAGAGCTCACTTAATCACCATTGATCACCAGATCCATCCAGATTTGTCCGATATCAGCTTCTGTGAACTGAAAGTGAAAACATTGGTCTGTGAGAGAGGTCGCCTGGGCAGCTCTACTTCAAGTTCCCTTAAGGTCACCCATGTCAATGTCGGCAGGTTCTCCCACCGCTACCATGGCCTCTTCACAAAAACATGGATGAAAATGGTGATTTTAAACATGACGACATTAAACAGGATGGGGACAAAGGGCCTCAAAGGTCTGGTTCCAGAGTGAACCTGTCCCAGAAGAGGCAGGCAACAGTGGGATTGGCAGTTGTAGCACATCTTGCTTGGTCAGTTCACTCCTGAGAGACCCCAGGATGATGCACACTAGTCTGAGCTCTCTGACAGacttgtgatatctcacatcgcACGGGTGTAGTTGTGCGGACTTAAGGAGTGGACAATGAACAGAACAAAGAAGTATGAAGGTCTGCGTTCCGAGGGGAAGCCCCCGGCTGAAGTCCCTATAGGTTGGCAGCGGAGGATCACCCACAGCGGGGTTGTCTACATAAGTCCCAGTGGCTCTTTGTTAGCCTGTCTGGAGCAGGTGAAGAGCTACCTGCTGACTGATGGCACCTGCAAGTGTGGCCTGGAGTGTCCTCTCACTGTTCACGAGATATTCAGCTTTGACCCCGGGGCGGTGGTCAAGCATAGGATGGCTGAGGATGCACAAGCCGATGCCGATTTCACCAAGCTGTGTATCCACAAGAGGAAGATCATTGCCACGGCGACACTGCACAGGAACATGGAGTCACTGCACCCCTCGCTGGCTCTGGCTAGTCACGGTAGTGGCACTGGTTCGGCGACGGTGGGTCCTATGAGTCATCCAGCAATAAAGAACAATATGTACGATGGTCCAACCAACAAGATGACAATACCTGGTCAACGGTACTATAACCATGAACTGGGTTCTCCTCAGAGAGATCCGTACTCTGGTTACAGCAGGACAAGACTGGGGGGAAGTGATCGCTGTAGCCAACAACGGTCTCCCTATCGTATCCGCCACAGTGTCCTGCTcagcccctcctcctccacctcatgTGGCTCGCAGCATTATGGTGATGGGACTCCCTCCCCAAGGACTGAACTTCTGGGGAGTCCTGAGCCCAACATGCTTGGTTTTCATGGAGCTTGCAGCCCAGGCTCTGCCCTTATGAACGGTGATCGTTTTACACCTCTCTCACCACCTAGTGTTCTGCTCCACGGCTCACCTTCGGCCACCCAGCCTTCGTGTGCCATAGCAGGAAGGACTAATGTACCTGTCAATGCCAAAAGCCCCAATATGCAGAAGCCCTTCTACAGCTTCCCCCACAACAACTTTCAACATAAGCTCCAGCCTGCATGCCATCCACACCCACAGTCGCACTTGTCCCTgtctcagctccctccctcctctgagaTGGACCCTCTTGGTATCCTGGACCCCATTCCAAGCAAGGCTCCAAGCCAGGGTCCCTTAGTGTCAAATGTATCTGGCCTCCAACACAGTGCCCATTCTCAGGTACCACCAATGAATGTAAACATCCCCCCTACCAGTGTCCCTTTGCCCAGCAACCTGCCTTTACCAACTGGGAAGTCTGGACATGTTGGGCATGGCCAGAGGGTCCAGCACCACCCTACCCCTTCATCGGTCTCGTCCTCGCCTATTGTGTCCCCGGTACATGGGCCTGTCCTTGCCAGGATGGAGGAGTCACCCCACCGTTCACGTTGCTCCTCCGGATCTTCTGAACATGGGAGCTTCGCTCACCCCACGGGGGTCCAGGTTCCTTGTGGGGGTTCAAAGCCACTTCCCCGGTCCCCTCGGGCCTCCTTGGGGTCCCCTCGACCTGCAATGCCGCCAAGTTCATATAAGATGGACAAACACCATCACTTGAACGATAACCCCAACTACCTGCCAGGGGGGATGAAAAGTAGTCTAAGCAGGCATTCCAACTCCATGTGCCCTCCAGCTCCTGGTTCTGATAGTGTCCTTCAAAGGAATCATTCGGTAGGAATGCCCCTTAACAAGATGCTAGATCAGCAGAATCCTGCTTCGTTCCCAGCCAGCAGTCTTCTGTCAGCCGCAGCCAAAGCACAGCTAGTGAATCAAAACAAACATCCCGACAGCGCAGCGGCTGCAGGCACAGAGGCTCACAGTGGCAGCGGTTTGGGACACCCAGGACTGGTTGGTGGAGGCAGAGGTGGGAACCTAGATGGACACAGCACTTTAAACCAGCGATATCTACCTAATCCTGGGCCGTTGGCGAGCGAGGTTCAAACCGGAAGAGCAGCATTAAGAGACAAACTCATGGGTATGGCTCAGCAGAGAGAGGCGAATCGCAAGCGGAAACTGTCCAATGATGTCAGCGGTGGTGGCGTCAACAATGACAGGGCTTTCGACGTGCTCAAACATCCAATGGGTGGCTCAGGATCAAGTTCGGCTAGCTTTCCAGAGCCTTTGAGGAGAATGTTTCAGCAGGGTAGCCTGCTCCCAAACACCTCCATGGCCCAGCTACTCCAGTCCATGAGCCACCAGAGTGCCCATAATGGGCCAAGCCACGTGGGCCACAGCCCAGCCCGATCCAGCAAATCTCCCTTCTTGGAGGAAGCTTTGCCTCATATGTCAGCTTTTCAGCAGAGCTTGCGGGGGCCTCAGCTCCAGGGCAGAACGTTGGTCCCTTTCTTCCAGAACATGAACAACGAAGGTCAGATTTCAGGCCAAGATCTAAACACGGAGCAGTTTAACGGGCCAATGAACGCAATGCATGATCCCGCCTTAGCTGGGAACGTTGGGGTGCTGGGTTACGGTGGTAGACAACATGCAGCCATGGGGTCAATGCAGGACAACCCAAACTCTCACCAGCAGCAGCAGTTTGgacattatcagaaaccatcccAGGTGCAAGGCAACCCCCACTTCAGAGGCAGGGCAGGATTGCCTCCCATGATGTCCAATGGCAGTGTCCAAGCCCTCTCTAAGTCAGTTGAGGTCAGTAGTTCTCTGAGCTGTGAGCTGAGGCAGGCCCAAGAGGAGAGTCTCCAGTCTCTCATCCGGAGCAGCCAAGCCAATACACAGCAACAGCTTGGTCTGGGTCGTCACTCCATACAGAGCCAGCAGCTCCACAGGTTCCAGAGCCAGGGCTCCCATCCTGTTGCCCCTCTCCCTGGTGGTGCTGCCTCCAACCCCATGAACAACCTCCTTCAGAGATTCCAGGGGGGTTTGCCTGAGAGGATTCCACAGCCCAACAGAGCTATGATGAGTCGACCGGGGATTATGTCCATGTCCCAACCCAGTGCCCCTTGCCTCCAGGAGAGTCATCGAGAATACCAGTCTCCCCAGGGCCTTCACAGTGGTGGGGGAGAAGTTATTGATCCTATCCACAGGGAAGCGATGGGCATGGCCAGCAAGAGCACATCTAATGTCATTACATCAGCGGGTGGTAGCAGTTCCTTCGCTGCTACTGTTGTCTGCGAGCCTGTTGACCTCTCCCATGCGGTCAACTCTGTCATCCACACCGGCCCCCTCCGCTCATATCGGGAGCCAGTGCCGGAGCACCGACACCATCCCAAGGTGGGCCGGCCCCGCAAGAAGACCCCTGAACGGAACATCTTCTCCCCCGTTGCCATGGAATCTCCTACAAGATTCCATCCGCCTCGACGTGGAGCCCAGAGAAGACAATGGGACAGAGAGGTGGCGGGCAAGGAGCAGGCTGGTCTGTGGCGTGATGACGAGCCCCTCCAACAGCTTTCCTTAGCCCAGGGCAGAAACGGCACCTACCCAGAAAGGCCCAAAGGTCAGGCCCACTTAGGCCCCCAGGATCAAACACCACTGCAAGTCCCCAGTGGTATGTATGCCCATATGAACGGCAACGGTATGGTTCACACCTCGGGAAGACCCAGAAACCCCAGCCTGTCCCCACCAGAGGGCCACTTCACCAAGGACTCCAGCCTCTTCAACGGACATCTGAACGGCCAACTCAACGGGCACTGCTACAACAGGTATTACAATGGTCACCTGAACGGGAGCCTGAGCGGCGAGGAGGACCTGAGGCCTGGGGACTTGCCCTCCTCCAGTGAGGGGCTCCACCGCAGGCCAAGAACTCAGACCCACTACCCGGGAGAGCTGCTCTGGGGCCAGGGCAAAGGCTTCCCTCCATGGCCAGGTAGAGTCAGACAATTTCCAGAGGACACTAACAGAGGATCTGGAGACCCTACACAAAGCAAACAAAATAACTAGAAATGGAGGAAAACGGAATAACAACCTAGAAGCTGCTATACAGGAGGCTATGAGCGAGCTGGATAAGATGACAGGCAATATGTCACAGAGAGAACGACAAGTCAAGACCCCTAAACCCAAGAGGAGGAAGATCTCCAGATGACAGTGAATGTGTGGATCCGTTACTTCAGTGGCCTTCTGAGTAGCGGTCCATCTAGCCAATGGGTTTCGTTGTAGCCGATGTGGAaccgctagctagttagctgtgtgCGCATTAGAATCGACCATTGTCCACTCTGTTAAATCAACTTGGTACTTAGTCCAACTGGATTGGTGCTACAATTAGTCAACACCCCTTCTACCTTGACCACCACCAAGACACTGACAGTGAAAGAAGTACAAGAAAGGATGGCGGGACCTAGCTGCAAAATAATCGCTATGATATATCCACTGCTAGCTTGTCCTTATATAGAATCTCATTCTTTTCCATATGAGGAAATTGTTGGTACAAATATTTCTGATGCATTTTAGATGTACAATAGACAAAGGAAAACGGTACATTATATTCAGTGATTTAATTGTGTATATTGTTCAGTATTATCATAGATGAGTCGATCTAATGCTCATTTTCTAATGTACATGTCTATCTTCTATGTTTTTATTTTGCACAAAACAGTGCGGCCAgagattttcttttttttccaaAAGAAAAGCAGCATAAAGGCATTTTTCTACAGATCTATTGAAACATGCTGTTAAGCATCAAACCGCAGAAGGGTTAGGAACATTTGAACTTATACAGACACTATTTTCAGGAAGGATGTTCTTCTCCTACTGGAAAGGCATACAGAGTCCCAAGAAAAGTAAACTGGAAGATTTTAAGATAGACACGGTGGGTCTGTCTGAACATAGAGAGACATGCAAATACTTTCTCTTATGTTTTTATCCAAGAAAAGAAAAAGCCATCAAGGGAAGGAGTCTCTAAAAAAAATGCCTCTTAAGTTAAATTATATTTACTCCCAaagtaaaaatgtattttctctgAATATTTTTGATACAGATTTTCTGTGTTATATCTGCCAAATGACTTTATTTGTGAATGTTTTGTGTTCATAAAAAAAAAAGGGTAAGTTATTGTAAAGTATAAACAAATTTGTTGTATACATGCATTCTGAAACTTAAGTATTCAATATTAACAGTTGTAATATATGGTTCTGTCACTAGTGTTTAATTTACAATTAAGTTAATATTTAAATGGTGCAAATCATGTAATTTGAGCATTGCTCtcttgtgttttttgttgttgttgtttttttacccttGAATGTGTCATTTTCAAGTGTCAAAATGCCTTATTGGATGAACTGCACATTCACAGTTCAGAAGAGATCAGTATTATACACGTTGGTTTCGTTTGCTCTGAAAAGCAAGTTTAAACGACCCACGACAGTATGAGAGTGAACATTGATTTGAGCCTTATATCCAATGCTATAACCCCCAGCTGCCAAAGCTATGCCCCATCACAGGTTGGGACTTTTAGTTTATATTATTTACCTTTTTAATACTCTATTGAATAGGTGGCCTTAATTTAGTTGATTTACATTGTTTGTGTTGCTTTTGtacttttattatttatttatgaatCCCATATTTATTTGTAGATTTGTTACATTGCATTAAAATGGTTACTTAGCAATAATACTAAGAGTTGTACACTCTGAAAAGCCTTTATGGTCTTATATTTTTCTCTTAACAAATTAACAGCCTATATAATGGATAAATATTCAGTCAGTGGTTTTTAAATATGAATTTATATATTTGTGTTTATTTATGAAGTGTAATTTCTTTGGATGCTTGTATGTGCatatagtgtttttttttttattactcaTGTCAAAACTGTGTGAATATTCCCATGGCCTGAagacatttttaaatgtttatattAAATGAGTGAACTTAATTTTCTGTACTTTATACCCTGACTCAGGAGGGGAACCTTCTGATTTGATCAGTCTTGGGTAAATCTGAAATTGTGAAACTGAAAAGTTCTTGATATAAGTTTGTCCAAAAATGTTGTATTTAAAATACAATATCAAGTCATATGTATTTAATTCTAACAGAACAACAGGGCATCCTAAAATGTAATCGCTAGGTGACCAAGTGTTAATACGAGTGTCATCAACATTATATTCATCTTGTTTAGAATTATTTAATTTAGCACTCTTACTCCTAAAATATGAAGAGCTCACCACTAGTTCATGGACTAAGTAAATCATGTTAACTGTTTTCCATTTCAAAATACTAGGCCTATTTATCATTAAAGTATCATGAGTTACATTTCATAACAATTATTTAGGTCTTCCATTTTCAACTTTTTGTCTACTGCAATGATCTCGAGTGATTGTGTTTATATGGAATAAATGTTTTGCCatcttgtaaaaaaaacaaaaaaacagttttGAATTAGTTTTTTATTGACTGTTTTTTTCCCATGTCATTTTGTGATCTTTATTTCAGGACATACGGTACAAGCTGGAGTGGCCCACATTGGTTTTATGATGTGAAAATATGTTTATTTGttgttaaacatttttattttaagtcATTTGGCATTTTAACAGTCACATAATGTGGCACCAACATTTAAGTATATTTTGTACTTGGGGTTCTTATAGTTTTTAATATCTTTCTGCATACATAACAGCTGTAGCATCTCCCCTTTCTGCTTCTCCAGCAGAAATGTTTCACATTTTAAAAAGTGTGCCTGAAATTACAGGCAGTGGAAAGTGGCTATTATGCTTTGTTCAAAATCTTTCCATTGTGTTTGTTCCATAGGGATGTACAAATTTGACAAAGTATTGCATTAATTTTGCAATAAAATTATGTATTCTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071179 lncRNA downstream 13168 40888770 ~ 40929236 (-) True LOC110502149
TU2071211 lncRNA downstream 53745 40888345 ~ 40888659 (-) True G1810361
TU2071201 lncRNA downstream 74857 40867332 ~ 40867547 (-) True G1810351
TU2071200 lncRNA downstream 75179 40867020 ~ 40867225 (-) True G1810350
TU2071187 lncRNA downstream 92401 40849804 ~ 40850003 (-) True G1810337
TU2071235 lncRNA upstream 4709 40992919 ~ 40995869 (-) True LOC110501883
TU2071259 lncRNA upstream 13100 41001310 ~ 41014470 (-) True G1810401
TU2071267 lncRNA upstream 20550 41008760 ~ 41009125 (-) True G1810408
TU2071345 lncRNA upstream 135352 41123562 ~ 41123869 (-) True G1810480
TU2071356 lncRNA upstream 144892 41133102 ~ 41133392 (-) True G1810491
XM_036959333.1 mRNA downstream 424 40930259 ~ 40941980 (-) True LOC110501881
XM_036959334.1 mRNA downstream 425 40930259 ~ 40941979 (-) False LOC110501881
XM_036959335.1 mRNA downstream 935 40930259 ~ 40941469 (-) False LOC110501881
LOC110502149 mRNA downstream 13167 40883596 ~ 40929237 (-) False LOC110502149
XM_036959330.1 mRNA downstream 60162 40835176 ~ 40882242 (-) False LOC110501879
XM_021579736.2 mRNA upstream 4705 40992915 ~ 41051487 (-) False LOC110501883
XR_005038969.1 mRNA upstream 451738 41439948 ~ 41447272 (-) True LOC118943638
XM_021579740.2 mRNA upstream 459689 41447899 ~ 41522899 (-) False LOC110501886
XM_021579738.2 mRNA upstream 459689 41447899 ~ 41523764 (-) False LOC110501886
XM_021579739.2 mRNA upstream 459689 41447899 ~ 41523764 (-) False LOC110501886
TU2070925 other downstream 129017 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 1997874 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 1997874 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2330117 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2729217 38208790 ~ 38213187 (-) False G1807731
TU2071828 other upstream 459689 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 616764 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1398612 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1616493 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1689047 42677257 ~ 42677760 (-) True G1812404

Expression Profile