RNA id: TU2071240


Basic Information

Item Value
RNA id TU2071240
length 3137
lncRNA type sense_over
GC content 0.34
exon number 3
gene id LOC110501882
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40942404 ~ 40988211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAAGTCATTGCTTAGACACGAGTCATTCTGCAAACTCATTTAGAACTCCTGTCCTGAGAACAGAGTAATGTTCTTTTGGTTTCACTTGGCTGCCTTAACACTCTCATGCAGATGATCCTTTGGTAAAGTTTTGGTTTAATTCTCCCGGTCAGTGTTTTGGTAATGTTTTTTTCTACTTGCCCTCAGGTAGAGTCAGACAATTTCCAGAGGACACTAACAGAGGATCTGGAGACCCTACACAAAGCAAACAAAATAACTAGAAATGGAGGAAAACGGAATAACAACCTAGAAGCTGCTATACAGGAGGCTATGAGCGAGCTGGATAAGATGACAGGCAATATGTCACAGAGAGAACGACAAGTCAAGACCCCTAAACCCAAGAGGAGGAAGATCTCCAGATGACAGTGAATGTGTGGATCCGTTACTTCAGTGGCCTTCTGAGTAGCGGTCCATCTAGCCAATGGGTTTCGTTGTAGCCGATGTGGAaccgctagctagttagctgtgtgCGCATTAGAATCGACCATTGTCCACTCTGTTAAATCAACTTGGTACTTAGTCCAACTGGATTGGTGCTACAATTAGTCAACACCCCTTCTACCTTGACCACCACCAAGACACTGACAGTGAAAGAAGTACAAGAAAGGATGGCGGGACCTAGCTGCAAAATAATCGCTATGATATATCCACTGCTAGCTTGTCCTTATATAGAATCTCATTCTTTTCCATATGAGGAAATTGTTGGTACAAATATTTCTGATGCATTTTAGATGTACAATAGACAAAGGAAAACGGTACATTATATTCAGTGATTTAATTGTGTATATTGTTCAGTATTATCATAGATGAGTCGATCTAATGCTCATTTTCTAATGTACATGTCTATCTTCTATGTTTTTATTTTGCACAAAACAGTGCGGCCAgagattttcttttttttccaaAAGAAAAGCAGCATAAAGGCATTTTTCTACAGATCTATTGAAACATGCTGTTAAGCATCAAACCGCAGAAGGGTTAGGAACATTTGAACTTATACAGACACTATTTTCAGGAAGGATGTTCTTCTCCTACTGGAAAGGCATACAGAGTCCCAAGAAAAGTAAACTGGAAGATTTTAAGATAGACACGGTGGGTCTGTCTGAACATAGAGAGACATGCAAATACTTTCTCTTATGTTTTTATCCAAGAAAAGAAAAAGCCATCAAGGGAAGGAGTCTCTAAAAAAAATGCCTCTTAAGTTAAATTATATTTACTCCCAaagtaaaaatgtattttctctgAATATTTTTGATACAGATTTTCTGTGTTATATCTGCCAAATGACTTTATTTGTGAATGTTTTGTGTTCATAAAAAAAAAAGGGTAAGTTATTGTAAAGTATAAACAAATTTGTTGTATACATGCATTCTGAAACTTAAGTATTCAATATTAACAGTTGTAATATATGGTTCTGTCACTAGTGTTTAATTTACAATTAAGTTAATATTTAAATGGTGCAAATCATGTAATTTGAGCATTGCTCtcttgtgttttttgttgttgttgtttttttacccttGAATGTGTCATTTTCAAGTGTCAAAATGCCTTATTGGATGAACTGCACATTCACAGTTCAGAAGAGATCAGTATTATACACGTTGGTTTCGTTTGCTCTGAAAAGCAAGTTTAAACGACCCACGACAGTATGAGAGTGAACATTGATTTGAGCCTTATATCCAATGCTATAACCCCCAGCTGCCAAAGCTATGCCCCATCACAGGTTGGGACTTTTAGTTTATATTATTTACCTTTTTAATACTCTATTGAATAGGTGGCCTTAATTTAGTTGATTTACATTGTTTGTGTTGCTTTTGtacttttattatttatttatgaatCCCATATTTATTTGTAGATTTGTTACATTGCATTAAAATGGTTACTTAGCAATAATACTAAGAGTTGTACACTCTGAAAAGCCTTTATGGTCTTATATTTTTCTCTTAACAAATTAACAGCCTATATAATGGATAAATATTCAGTCAGTGGTTTTTAAATATGAATTTATATATTTGTGTTTATTTATGAAGTGTAATTTCTTTGGATGCTTGTATGTGCatatagtgtttttttttttattactcaTGTCAAAACTGTGTGAATATTCCCATGGCCTGAagacatttttaaatgtttatattAAATGAGTGAACTTAATTTTCTGTACTTTATACCCTGACTCAGGAGGGGAACCTTCTGATTTGATCAGTCTTGGGTAAATCTGAAATTGTGAAACTGAAAAGTTCTTGATATAAGTTTGTCCAAAAATGTTGTATTTAAAATACAATATCAAGTCATATGTATTTAATTCTAACAGAACAACAGGGCATCCTAAAATGTAATCGCTAGGTGACCAAGTGTTAATACGAGTGTCATCAACATTATATTCATCTTGTTTAGAATTATTTAATTTAGCACTCTTACTCCTAAAATATGAAGAGCTCACCACTAGTTCATGGACTAAGTAAATCATGTTAACTGTTTTCCATTTCAAAATACTAGGCCTATTTATCATTAAAGTATCATGAGTTACATTTCATAACAATTATTTAGGTCTTCCATTTTCAACTTTTTGTCTACTGCAATGATCTCGAGTGATTGTGTTTATATGGAATAAATGTTTTGCCatcttgtaaaaaaaacaaaaaaacagttttGAATTAGTTTTTTATTGACTGTTTTTTTCCCATGTCATTTTGTGATCTTTATTTCAGGACATACGGTACAAGCTGGAGTGGCCCACATTGGTTTTATGATGTGAAAATATGTTTATTTGttgttaaacatttttattttaagtcATTTGGCATTTTAACAGTCACATAATGTGGCACCAACATTTAAGTATATTTTGTACTTGGGGTTCTTATAGTTTTTAATATCTTTCTGCATACATAACAGCTGTAGCATCTCCCCTTTCTGCTTCTCCAGCAGAAATGTTTCACATTTTAAAAAGTGTGCCTGAAATTACAGGCAGTGGAAAGTGGCTATTATGCTTTGTTCAAAATCTTTCCATTGTGTTTGTTCCATAGGGATGTACAAATTTGACAAAGTATTGCATTAATTTTGCAATAAAATTATGTATTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071179 lncRNA downstream 13171 40888770 ~ 40929236 (-) True LOC110502149
TU2071211 lncRNA downstream 53748 40888345 ~ 40888659 (-) True G1810361
TU2071201 lncRNA downstream 74860 40867332 ~ 40867547 (-) True G1810351
TU2071200 lncRNA downstream 75182 40867020 ~ 40867225 (-) True G1810350
TU2071187 lncRNA downstream 92404 40849804 ~ 40850003 (-) True G1810337
TU2071235 lncRNA upstream 44992 40992919 ~ 40995869 (-) True LOC110501883
TU2071259 lncRNA upstream 53383 41001310 ~ 41014470 (-) True G1810401
TU2071267 lncRNA upstream 60833 41008760 ~ 41009125 (-) True G1810408
TU2071345 lncRNA upstream 175635 41123562 ~ 41123869 (-) True G1810480
TU2071356 lncRNA upstream 185175 41133102 ~ 41133392 (-) True G1810491
XM_036959333.1 mRNA downstream 427 40930259 ~ 40941980 (-) True LOC110501881
XM_036959334.1 mRNA downstream 428 40930259 ~ 40941979 (-) False LOC110501881
XM_036959335.1 mRNA downstream 938 40930259 ~ 40941469 (-) False LOC110501881
LOC110502149 mRNA downstream 13170 40883596 ~ 40929237 (-) False LOC110502149
XM_036959328.1 mRNA downstream 60165 40835176 ~ 40882242 (-) False LOC110501879
XM_021579736.2 mRNA upstream 44988 40992915 ~ 41051487 (-) False LOC110501883
XR_005038969.1 mRNA upstream 492021 41439948 ~ 41447272 (-) True LOC118943638
XM_021579740.2 mRNA upstream 499972 41447899 ~ 41522899 (-) False LOC110501886
XM_021579738.2 mRNA upstream 499972 41447899 ~ 41523764 (-) False LOC110501886
XM_021579739.2 mRNA upstream 499972 41447899 ~ 41523764 (-) False LOC110501886
TU2070925 other downstream 129020 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 1997877 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 1997877 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2330120 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2729220 38208790 ~ 38213187 (-) False G1807731
TU2071828 other upstream 499972 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 657047 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1438895 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1656776 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1729330 42677257 ~ 42677760 (-) True G1812404

Expression Profile