RNA id: XM_021579741.2


Basic Information

Item Value
RNA id XM_021579741.2
length 1976
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110501887
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41622821 ~ 41624796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTGTGTATGCAGCGACCGCAGGGATAGGACCGTTTATGCCGTGACGCACCATAGAGATCATAACATCAACCCAAATATAGCTTCGATAACTTTAACGTCGTTTATGGACGCAGTGTAGGCATATCTCAGGATTACCCGAACTCATCGACAACCTCTGGAGTGAATTTATTTATGTCTTTCGTTCCCGGAACGGAGGCTAGTTTTTTTGGACAGCCAATGTGCCAGAGGAGACGCGGGTGACACAAGTGCGCAGTGTTCACGGGAAAAACAGCAGAGAGACCGCAAGGAGGGTGTTTTCGTCCTTAAGCTGTTCGGTGAGTGCGAGGAATTTGACTGTCACAACATGGAATCTTAACTGGAGTGTGTGAGGAGAATTGTAATGACCACCGCGTTGCGTCCTACAGACGCGGACACTGTCCACCAATGCAGCTGAGGGCAAAACAAGGATCAACCAGCCAGAGCGCACGGCGGGCCTGTAAACACCTTGACATTAGGTTTGTTGATATTATTTGTGTGGATTCATCGAAGAGCCTATTGAATATTAAAACGCTATAGCCTATTAGGCCATCCGATAGGTCCTACATAAAGGAGCCAGGCGTTCCCCTCAACTGTTTCGAGAATGGGCAACAGTTTCTCCAACATATCTGCTTTCCAATCACTACACATTGTGATGCTGGGTTTGGATTCCGCTGGCAAAACGACTGTTCTCTATCGTCTGAAATTCAACGAATTCGTAAACACTGTGCCAACAATTGGATTCAACACTGAGAAAATCAAACTGAGTAATGGTACCGCGAAGGGGATCAGTTGTCACTTCTGGGACGTCGGAGGTCAGGAGAAGCTGCGGCCCCTGTGGAAATCCTACAGTCGGTGCACGGACGGCATCATTTATGTGGTGGACTCAGTGGACGTTGACCGGTTGGAGGAGGCTAAAACAGAACTGCATAAAGTCACAAAATTCGCAGAGAACCAGGGGACACCTCTTCTGGTGATAGCCAACAAGCAGGACCTGCCCAAATCTCTTCCAGTCGCAGACATTGAAAAACAGCTGGCTCTCCACGAGCTCACTCCATCCACCTCATACCACGTCCAACCTTGCTGCGCCATAATTGGCGAGGGACTTCACGAGGGTATGGACAAACTATATGAGATGATAGTAAAGCGGAGAAAATCTTTAAAGCAAAAGAAGAAACGATAACGACCGCCCATGTGTCGTAACGTATATGGACAATTACTGTATCTAAATGCTTTTCGGGTATGCCGATGTTGCCCTAAAATCACGTTTACTTTGCGGTGATTTTTGTATTTCCTTTCATTGGGTTATTGTCATAGTTGCTGACGCTATGAACCCTATTAGCTGAACTATGCTTTTGTACACAAGAGGGTGCCTCTGTGTGTGCAAGATATATACCAAGGTTAACCAAAAAAAAACTTGAAATTACTTTTATCACAGGAACAAAGCATTGATAAATGACAACGGGCTGGCCCGTTATTTGCTGCTGTACGGTGGATTCTAATTCTGTAGCTCAACATGTGATTTTGAAGTAGCATCCCATAGCCTACCTGTAGGCCTACTGTGATTGACTATGGACAGCCTATCGACACGTCTTCACGGAGTGCTTCTTCGGACATCAAGTTTGACTTTGTACGTTAAGTGGATGTGGGTCAAAATGAAATGGACCCTGTTCATTCAGAGAAAATAACAAACAGATGTCTGTGTTATGACAGTCTCACCTCAGTCTCTGTCTCGGTATATTAATGAAGACGCCAACAAGGCTTTGGAGTGTTGAATTAGCTTTTACTATGCGTGATGGACTAAAGATAACATTGCCTGCAACGTGGTCCACTACTTTGCACTTTTCATTTCCTAACAAAATAATAAAGTACTACACTGTATAGCAAAACACAGGCTGTTTATGTACCTGAAAGCCAAAATtgaagtattttttttatattaaaatatataaaatgcA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071928 lncRNA downstream 32323 41589230 ~ 41590498 (-) True G1811025
TU2071831 lncRNA downstream 169234 41449902 ~ 41453587 (-) True G1810940
TU2071812 lncRNA downstream 191791 41430763 ~ 41431030 (-) True G1810926
TU2071797 lncRNA downstream 211122 41411476 ~ 41411699 (-) True G1810912
TU2071796 lncRNA downstream 212733 41409402 ~ 41410088 (-) True G1810911
TU2072083 lncRNA upstream 17973 41642769 ~ 41642992 (-) True G1811165
TU2072087 lncRNA upstream 21206 41646002 ~ 41646266 (-) True G1811169
TU2072162 lncRNA upstream 139831 41764627 ~ 41764828 (-) True G1811240
TU2072202 lncRNA upstream 167638 41792434 ~ 41792652 (-) True G1811279
TU2072348 lncRNA upstream 267753 41892549 ~ 41892759 (-) True G1811414
LOC110502151 mRNA downstream 9685 41612562 ~ 41613136 (-) True LOC110502151
XM_021579738.2 mRNA downstream 99057 41447899 ~ 41523764 (-) False LOC110501886
XM_021579739.2 mRNA downstream 99057 41447899 ~ 41523764 (-) False LOC110501886
XM_021579740.2 mRNA downstream 99922 41447899 ~ 41522899 (-) False LOC110501886
XR_005038969.1 mRNA downstream 175549 41439948 ~ 41447272 (-) True LOC118943638
XM_021579742.2 mRNA upstream 44100 41668896 ~ 41743824 (-) False LOC110501888
XM_021579743.2 mRNA upstream 77800 41702596 ~ 41743824 (-) True LOC110501888
XM_021579998.2 mRNA upstream 140167 41764963 ~ 41767178 (-) True LOC110502131
XM_036959343.1 mRNA upstream 173658 41798454 ~ 41899740 (-) True LOC110502152
XM_021579753.2 mRNA upstream 967422 42592218 ~ 42603449 (-) True LOC110501896
TU2071948 other downstream 17590 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 157174 41447899 ~ 41465647 (-) True LOC110501886
TU2070925 other downstream 809434 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 2678291 38944136 ~ 38944530 (-) False G1808299
TU2073040 other upstream 762026 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 979907 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1052461 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 2885611 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 3048651 44673447 ~ 44673888 (-) True G1814480

Expression Profile