RNA id: XM_021579742.2


Basic Information

Item Value
RNA id XM_021579742.2
length 4969
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110501888
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41668896 ~ 41743824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCGCGGTGACATCAGCAGGGTCCTGCTCTCTCTTCCCATCGCCAAAGACTCACAAAGGACTACAACTGGATAGTCGGGAACTCGCAAAACTACGCCCGTTTGATGCATTTATTCCAAAGGATTTATTTAAGGGACTTTTACTAGacacCATGGAAGGCTGTTGATGGCTAACTCTGCCTTTGGCTAAAACGTAACTCAGGAGAGCAGCATGAACACGTAGGTTGGGTGTGCAGGGAAATAACCAACAATGGCCGCCCATCGAATCAGAGCGACAAACAACAACATCGCACTGCCGCGCTGCAAGTCAGAGGGGACACTCATTGACCTCAGTGATGGAGTGTCTGAATCCAACTGTCTCACAGATGTCAAAGTGCCTTCTCCCAGTGCCTTAAGACTGGACGCCACTGCCTCCTTCGGCACTGCCAGGGAAGTCGTTGCTATTAAGGATTACTGTCCCTCCAGCTTCACCACCCTCAGGTTCTCCAAGGGAGAACATCTCTTTGTGCTGGACACATCGGGTGGAGAGTGGTGGTACGCCCACAACAGCACTGAGATGGGTTACATCCCTGCGACATACGTCCAGCCCATCAACTACCGGGACTCCTCCTTCAGTGACAGCGGTATGATCGACAGCCTAGGAGACTGCTCTGTTGAGGAGGGAGCCAAGGAGCTGGACCTCCTTGGAGATTGGACCGGGGTGATGCTGAAACCTACTGCCCCCCAAAACGGGAACCCCTTTGCCCCCCATCACCAGCACCTTAGCCGTAGCTCCACTAACCCTTTCCTCAACGGGGCCCTTCAAGGTTCTTTGGATCAGAACAGTAATGAGAACAGTAAGTCAGTGGACCTTCTTCTTTTTGACAACCTAGCCTCCTCTGTCCCACCAAACTCTACCAGCAGTAGCATCAACATCAACGGCTTTGGCAGTGGCATTTTCGATCTGAAACCCATCAGCCCCAGTTTGGGAGTGGGCCAAATGTTACGCAGGGACAACCCATTCTTCAGGAGCAAGCGATCCTACAGTCTCTCAGAACTTTCAATCCTGCAAGCTCAAAATGACGTCCCTCAGGCATCCTCAGGTTTTTTTGGAGGCCTGAAAGCCCCTGCACCTGAACAGTTCCAGAGCAGAGAGGACTTCCGGGCGGCGTGGCTCAATCACCGCAAGCTAGCCAGGTCCTGCCATGACCTGGACTCCTTGGGTCAGAACCCAGGCTGGGGACAAACACAGCCAGTGGAGACCAACATTGTGTGCCGTTTAGACAGTTCTGGAGGAGCTGTCCAGCTTCCAGACACCAGCATCAGCATCCACATCCCAGAGGGCCACGTGGCCCCTGGAGACTCCCAGCAGATCTCCATGAAGGCCCTGCTGGACCCACCGCTGGAGCTCAACAATGACCGAACAACGACCGTAAGCCCTGTGGTGGAGATCAAGCTCGGTAACATGGAGACCAAAACCACAGTCACCCTTGAGATGACGGTGTCCGTTATGGTGAAGAACGAGAGCAGGCAGACGACAAAGGTCATATGTGTGAGGAGTGACTGCAAGGAGGGGCCCTACACACCAATCCCCCAAGCCTATATGTATGGGGACAACATCCAGGTCTGTCTGGATAACCTTGAGCCGTGCATGTATGTGTCTGTTGTGGCCCAGGCCCAGTCAGTTGCTCCAGAAACCACTGTTTGGGACAACGTGGTGAAGAAGGTCACGCTCGGTGTCTATGGTCCCAAGCACATTCACCCATCCTTTAAGGCTGTGGTGGCCATCTTTGGCCATGACTGTGCCCCAAAAACATTACTGGTGAGTGAAGTAGGGAAGCAGGCCCATGCCACCCCTCCAGTGGCTCTTCAGCTCTGGGGGAAGCACCAGTTTGTCCTGGCAAGGCCCCAGGACCTTCGGGTTGGTGTTTACTCCAACATGGCCAACTATGAGGTAAAGGCCAGTGAGCAGGCCAGGGTGGTTAGGGGTTTCCAGGTCAAACTGGGAAAGGTTAGCCGGATAGTCTATGTGATCGCCTCACGCACTGCTGATGATGTCTCAGATTTCACATTACGTGTCCAGGTCAAGGATGACCAAGACTGTATTCTCGCCCAGTTTTGTGTTCAAACTCCAACACCTCCACCCAAGACCGGTCCACAAACATCTGTGCAGAGGCGCTTCCTGAAGAAGAAGGAACTAGGGAAAATTGTCTTGTCCCCTCTGGCCATCACTACCAAATACCCTGTGTTCCATGACCGACGAATCCGCAACCTGAAGTTTGGCAAGTTGATCAAAACAGTCATCCGTCAGACCAAGAACCAATACTTACTGGAGTACAAAAAGGGGGATTACTTTGCCCTTCTGAGCGAAGAGAAAATCAAATTGAAGGGACAGTTGTGGACTAAGGAATGGTACATCTGTTACTATCAGGGTAGAACAGGGCTTGTACATGCAAAAAATGTTCTGTTGGTGGGCAAAGTAAAACCCATTTACTTCAGCGGTGCTGAACTAACCACTACACTCTTACTGGATCAGATCCTGAAGCCCTGCAAGTTCCTGACGTACATCTATGCCTCTGTGAGGACTATACTGATGGAGAACGTAGGAAGCTGGAGGGCGTTTGCCGATGCCCTGGGTTACGTTAACCTACCGCTCTCACACTTCTGCCGTGCAGAGCTGGACAGCGAGCCTGAGAGGGTGGCGTCTGTTCTGGAGAAGCTGAAAGAGGACTGCAATAATACAGAGGGCAAGGAGAGGAAATCCTTCCAGAAGGAACTCATGACAGCGTTGCTGAAGATGGACTGCCAGGGCCTGGTGGCCAGGCTGGTGATGGACTTTGTCCTGCTGACCACGGCGGTGGAGGTGGCTGGGCGGTGGCGGGAACTGGCTGAAAGGCTATCCAAAGTGTCCCGTCTGCAGCTGGATGCATACGAGGGACCGCACAGAGACAAGAACGGAGTGATGGACAACGAGGCCATGTGGAAGCCAGCCTATGACTTCCTACTGACGTGGGCTGCCCAGATTGGGGACAGCTACCGGGACGTGATCCAGGAGCTCCACATGGGCCTGGACAAGATGAAGAGCCCCATCACCAAGCGTTGGAAACACCTGACGGGAACGCTCATCCTCGTCAACTGCCTGGATACGCTCCGGAGCTCAGCCTTCAGCCCCGCCTCTCAGGACGACTGTGCCATATAGACCAAACTGACCATAATCATTGTCATCATCACTCATAGGGTGCAGCTTGTCTCCTTCCCTTATATCTCCGCTAATTGGAAAGCAATTTATTTCCCACCCGTATAGATGATAGAAGAGGATGAACCTTTGGACTGTTGATACAGACTCCGCCTCCTGCTGTCCTTCCTATGTCCATCACCATCCCATCCCCACCCTTGACCCAACCCCACCCCTGTGGATCACCCCTGTGATCATTTTTGCATATCTTCCTATGCTCCGCAACCTTATTCCCTGTTTGTATTGAAGATTCTGAacaacagctgtctgtctggtccctCTGAGTCTTGCTTCCTCTGAATCTGCCTTTAGTCCTTATGGGGGTGAGGGGCTGGACTGCTAGACTACTCCCAGGAGGATTAGACTGCTAGACTGTCCCCCCTCACTCCTAGAAGGACTAGACTCCCCCTCACCCCTTGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCTCCAGGAGGACTAGACCCCCCGCTCACCCCTTGGAGGACTAGACTCCCCCTCACCCCTTGGAGGACTAGACTCCCCCTCACCCCTTGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCTAGGAGGACTAGACTCCCCCTCACCCCCAGGAGGACTAGACTCCCCCTCACCCCCAGGATGACTAGACTCCCCCTCACCCTCAGGAGGACTAGACTCCCCCTCACCTCCAGAAGGATTAGACTCCCCCTCACCTCCAGGAGGACTAGACCCCCTCACCTCCAGGAGGACTAGACTCCCCCTCACCTCCAGGAGGACTAGACTCCCCCTCACCTCCAGGAGGACTAGACTGCTAGTCCTCAACCACCCATCTTTGTATAGCCACCAGCCAAACTACACAATGCTACAGTCTCAGTATTCACAAAGACTATTTTAATCTTCATTGTCTGGCAtagtatgtattttttttactctAAATATGGCACAGCATTTTTTAAAGACACTTTGACACCTTTCGTTCATAACTGTGGACTCGATCCAGTGCAAAGACAACGTTTCTAAATGGTATCCTTGTTCTCTAGCCTTGTCACGTGTGTCAAACGAGCTAAATATAATGTGTTTATTTATAAAGCGTCGGAGTTGTTCAGAAGAAAGCGCTCTCTTATTGTTTCCTCCTACTGTGGTCCGTTTTAATTCAACTACTTTGTTAGTGAACATATTTCTAAGGGCCGAGTGAATAACTGTGCATAACTCACAGATTAACTTTGTTCTTtcatttaaaataaattcatCTCTCACCGCTTTTTCACCTCTCTTAACTATCTTTTAAAAGGAAACCATATGGCCTGCAGTTATTTATATACTAGACTTAGTGAATATGTTGTACCGAAGCTGGTCACCAGTTAATATGACTCTACATATAACTACATATATGCCTCATTCAATATCCAACCACTGTTACAATGCTAAAACTCTGTTAAAGATTCTGGGTATGTTTTCTCCCCTGTTTGTGTTGTTAATACACATTTCACATCTGTTTTGTGGCTGCATACTTTTGTGGAGaatataaataaaaatgtgaatattttttACGCAATTCATTATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2072087 lncRNA downstream 22630 41646002 ~ 41646266 (-) True G1811169
TU2072083 lncRNA downstream 25904 41642769 ~ 41642992 (-) True G1811165
TU2071928 lncRNA downstream 78398 41589230 ~ 41590498 (-) True G1811025
TU2071831 lncRNA downstream 215309 41449902 ~ 41453587 (-) True G1810940
TU2071812 lncRNA downstream 237866 41430763 ~ 41431030 (-) True G1810926
TU2072162 lncRNA upstream 20803 41764627 ~ 41764828 (-) True G1811240
TU2072202 lncRNA upstream 48610 41792434 ~ 41792652 (-) True G1811279
TU2072348 lncRNA upstream 148725 41892549 ~ 41892759 (-) True G1811414
TU2072353 lncRNA upstream 151130 41894954 ~ 41895190 (-) True G1811419
TU2072355 lncRNA upstream 153402 41897226 ~ 41897449 (-) True G1811421
XM_021579741.2 mRNA downstream 44100 41622821 ~ 41624796 (-) True LOC110501887
LOC110502151 mRNA downstream 55760 41612562 ~ 41613136 (-) True LOC110502151
XM_021579738.2 mRNA downstream 145132 41447899 ~ 41523764 (-) False LOC110501886
XM_021579739.2 mRNA downstream 145132 41447899 ~ 41523764 (-) False LOC110501886
XM_021579740.2 mRNA downstream 145997 41447899 ~ 41522899 (-) False LOC110501886
XM_021579998.2 mRNA upstream 21139 41764963 ~ 41767178 (-) True LOC110502131
XM_036959343.1 mRNA upstream 54630 41798454 ~ 41899740 (-) True LOC110502152
XM_021579753.2 mRNA upstream 848394 42592218 ~ 42603449 (-) True LOC110501896
LOC110502155 mRNA upstream 860174 42603998 ~ 42605768 (-) False LOC110502155
XM_021579754.2 mRNA upstream 996795 42740619 ~ 42748559 (-) False LOC110501897
TU2071948 other downstream 63665 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 203249 41447899 ~ 41465647 (-) True LOC110501886
TU2070925 other downstream 855509 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 2724366 38944136 ~ 38944530 (-) False G1808299
TU2073040 other upstream 642998 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 860879 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 933433 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 2766583 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 2929623 44673447 ~ 44673888 (-) True G1814480

Expression Profile