RNA id: XM_036959343.1


Basic Information

Item Value
RNA id XM_036959343.1
length 5288
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110502152
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41798454 ~ 41899740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACTGTTAACGGGGGAGTGGTTTACTTTTTCACTTCGCTTCAAGCACAGCGCATGATTCCGTCCGCGCTTGAGACATTTGGAGGCATCGCTTTCATGAGATTTAATCTCTTTTTACAACAAGGATATATCACAGTAGCGAGGATGGAATTGAGAAAGTTGTCACGGTTATATTTCTTCATTGTCTGTGTTTTGAACACCTCCAGCTCTGCATCCGCTGCCAATCACCATATCTGCAATGGCCCATTGGTATCCATGCTGCCCCGGGGCTCTTTTGTGAGCTCCTCTCAGTCCTCTGTCAGTTATGCTCCACACTTCTCCAAGATCAACAGAAGAGATGGAGCGGGAGGCTGGTCTCCCCAGGTGACAGATAGACATCCTTGGCTGCAGCTGgacctcagagacaggatagaggtGACGGCCGTCGCCACACAGGGGCGCTACGGAAGCTCAGACTGGGTCAGCGGCTACCTGCTCCTGTTCAGTGACACAGGCCGAGCCTGGAAGCAGTACCGACAGGAGGACGGGGTGGGGAGGTTTGTGGGGAATGTGAATGCTGACGGTGTCGTCCACCACAAGTTGTCCCACTCTATCAGAGGCCGCTTCCTGCGCTTCGTCCCCCTGGACTGGAACCCCAGTGGCTGGGTGGGACTCAGAGTGGAGGTCTACGGCTGTGCCTACAAATCAGACGTGGCAGACTTTGATGGCAGAAGTTCCCTGCTCTACCGGTTTAACCAGAAGTCCATGAGCACGGTGAAGGATGTGATCTCATTGCGCTTCAAGAGCCGCCAGGCTGAGGGGGTGCTGCTCCATGGAGAGGGTCAGAGGGGCAACTACATCACACTGGAGCTGCACCGGGCCAGGCTGGCCCTCTACCTCAACCTGGATGACACACGGCTGCGGTTCAGCAGTGGGCGTGTTGCGGTCACTCTCAGCAGTCTTCTGGACGACCAGCACTGGCACTCTGTCCTCATCGAGCGCTTCAACAAGCAGGTCAACCTCACCGTGGACACCCACACACAGCACTTCAGGACCAAGGGGGAAGGAGACTCCCTGGAGGTGGACTATGAGCTCAGCTTCGGGGGCATCCCACTGCCAGGTAAGCCTGGTACCTTCCTGAGGAAGAACTTCCATGGCTGCATGGAGAACCTCTACTACAATGGGATCAACATCATCGACCTAGCCAAGCGACGCAAGCCTCAGATCTACAGCGTGGGCAACGTGACCTTCTCGTGCTCTGAGCCCCAGCTGGTGTCCACTACCTTCCTGAGCTCCAGCAGCAGCTTCCTGTCGCTCCCGGCCACGCTGTCTGCTTCAGGGGGCTTCGCTGTGCGTTTCCAGTTCAGAACGTGGAACCCAGATGGGCTACTGCTCTCCACCCGGCTGGCCCTGGAGCCCCAGCGACTGGAGCTGCAGATCAGCAACAGTCGGCTGCGCCTGACCCACCACATGTCAGCCCAGCAGAAAGAAGAGGTCTCCACCGGTCACAGAGTGAATGATGGACTGTGGCACTCTGCGAGTCTCAGCTCCCGAGGTCTCCAGGTCACCATGACTCTGGACAATGAGCCGTCCTCAACTATGGAGCTGGGAGACCACATGGAGGCAGGAGACAGCCTCTACTTCGGAGGTTGTCCGTCTCTGAACGTCTCAGGCTGTGAGAACCCCACATTGGCGTTCCAGGGGTGCATGCGTCTCTTCTCCATCAACAGCCAGCCCATGGACCTGAACCTGGTGCACCAAGGACGACTAGGAGACTACAAGGAGCTGCAGTTTGACACATGTGGCATCCATGACAGATGTCTGCCCAACTTCTGTGAACATGGAGGGCAGTGTTCCCAGTCTTGGAGCTGCTTCTACTGCGACTGCTCTGGGACAGGATACACTGGAGCCACCTGCCACAACTCCATCTATGAGGCATCATGTGAGGCCTACCGTCTGACTGGCAGCTCCTCAGGCTACTTCTCCATTGATCCAGATGGCAGTGGTCCACTGGCGCCCACACTGGTCTACTGCAACATGACAGagaACAAGGTGTGGACAGTAGTGACCCACAACAGCACAGATCCAGTCAGGGTCCAGGGTTCTACACTACAGAAGCCCTACATTATGAAGTTTAACTACAGCGCCTCACCTGAACAACTGCTGGCCCTCGTGTCCGGGTCAGAGCAATGTCAACAGGAAGTTATGTACAGCTGTAGGAAGTCCCGCCTCTTCAACACCAGAGATGGCAGCCCTCTGTCCTGGTGGGTGGACCAGGGTGGAGAGAGACGGACCTACTGGGGAGGCTTCCTGCCAGGTGTTCAGCAGTGCTCCTGCAGCCTGGAGGAGAATTGCATGGACATGAACTACTTCTGCAACTGTGATGCAGACACAGACTCATGGTCTAATGACACAGGAGTACTTTCTTACAAAGAGCACTTACCAGTGAGTGAGATCGTGATTGGGGACACCAACAGAACTGGCTCTGAGGCGCTCTACAGAATCGGCCCGCTGCGTTGTTATGGCGACAAGTCTGTGTGGAATGCAGCGTCCTTCTACCAGGAGTCATCCTACCTGCACTTCCCCACCCTCCAGGCAGAGCTCAGCGCTGATATCTCCTTCTACTTCAAGACCAGCGCTCCCTCAGGAGTCTTCCTGGAGAACGTGGGCCTCAAGGACTTCATCAGAGTGGAGCTCAGCTCTCCGTTTGCAGTGACGTTCTCCTTTGATGTGGGAAACGGGCCGGTGGTCCTGGCCATTAAGTCCCACGTGCCCCTGAATGATAGGCAGTGGCACTATGTGAGGGCGGAGCGCAGCGTGAAGGAGGCCTCGCTGCAGGTGGACCAGCTGCCCCTGCGCTTCCTGGAAGCTCCATCTGAGGGACACCTCCGCCTCCGGCTCAACAGCCAGCTGTTTGTGGGGGGAACGGCGGCTAGGCAGAGGGGCTTCTTGGGTTGCATCAGAACTCTGACTGTAAACGGTGTGACCTTTAGCCTGGAGGAGCGGGCTAAGATGACCCCGGGGGTGAGCGCTGGCTGCCCCGGCCACTGTAGTGGCTCCAGCAGTCTCTGCCACAACAGCGGGAGGTGCATTGAGAAGAACAGCGGCTACGTCTGTGACTGCTCTCAGTCTGCCTATGGGGGGCCCTCCTGCAAGGAAGAGGTGTCTGTGTCGTTTAACAGAGAGTCGTCGGTGACCTACACCTTCCAGGAGCCTTTCTCTGTGATGCAGAATAGGAGCTTCCAGGCCTCCAGTGTCTACAGAGGGAACAGCAGGGCCGGAGAGAACATGGCTTTCATTTTCATGACCACACAGAGCCCTGCCATGCTGCTCACTGTCAGCACCTTCAGCCAGCAGTACATAGCAGTCATCCTGGCACGCAACGGGAGTATCCAGATCTGGTACCATCTCCATGTggacaggaggccagatgtgtTCAGTCCCAGACCCTCCAGCCTGGCAGACGGACGCCTCCACCGTATCAGAATCCACCGTGAGGGAAAAGACGTCTACCTACAGATTGACAAGGACATGAACCTAAAATACAGCCTGTCACCAGACACAGAGTTCATCTCCATCAAATCACTGACCTTGGGGAAGGTCACAGTTGACACTATGGATGAGGAAGTGATGCAGGCAGGATCTAAGGGCTTCATTGGCTGCCTGTCCTCAGTCCAGTTCAATCACATGGCTCCACTGAAGGCAGCGCTACTGAACCGTGCCAGCTCATTGGTCAGCGTACGGGGTCACTTGGTGGAGTCTAACTGTGGTGCGCTGGCTGACTCAACAATATTTCACTCTCAATCAGATCATTCAGAGACAGTCGGCAGAGGCAGGGGGCCATTAAGGAACGCTTCACAAAGCAACTATGCGGTAATTGGAGGTGTGGTGTCAGCAGTAGTCTTCATCAGTCTGTGTGTAGTGGCGGTGATGACCCGTTTCCTGTACCAGCACCGGCAGGCCCGGAGAGACGCCAGCATCAAGGAGAAGGAGCACCGGACTAACCTGGAAACAGCCTACCGGAGAGAAGCAGCCTACCGTGCAGAACCAGCCTACCGGACAGAGTTCCACCTCCATGACAGTCATAGCTCCACCCTCAATGACAACAGGGAGTACTACATCTGAACACCTGTGTCCCAGTCCCCTGGTCATCAGGGAAGGCCTCTCCTCTGAAAGTGGATTGGGAGGTGGAGATGTCACTGCAGAATTCCGGACAAGAAAATGGCCAAGAGTCCGAGCCCAGAACCCTTCTCCAGGGATTCTGCTCGGGAATTTGCCCACTGTCCGATTATTACAAAAcatgtatgtagtggactacaCGTTTAGCAGGTGTTTAGGGCTGTAGGTGTATCATGTGGTCGGTAAAACTGTCAGACAATATGGAGCGAATATGCAGGTGTGTTTTCGGAACAATCTCTCAACCAGCAGAGGAAAAGACCGAGACAAAGAAGGAAAGGAACCATGAGAACATTGAATGTCACCTGTCACACCGTCTGAATGTGTCGTACAAACTCCTGAAGACATCATTCTTCTTGTGACCCCCAATATTCTTCAAGATGTTCCACATCGTTCTGTGGAACGTCCTAAATGACATCTGAAAGATGTAGGTCAAGCATGTAAGTGAACCGTGAACTCTGCAGTGTGGCAATGACCGAACATTGAAATGAGAGAATGAAAGAATGAAGGACTTTACTGCCTTCTGTTAGAGTGCCTCTTCATGTTGTTTTAACCTCCTTTTTCTAAACCCTTTAGATCTTTGTTTAAATTAATTAGTGTTCATTTGTGTTTCCTTTATGTGCTAAGGGAATCATAGATCTGAATATGAACCACCTGTACTGTAATCATCATCTGTTCAAGTCTATAACAAATGGATGGTGTAATTCGGTGTATTACACAATGCTGTAATTTATCTAAGTAATGTTTCAAAGATGGATAATGCTCAAAGGTGAAACATTTTGCTGTAAAGTAGAAAGATGAGTATGTTCCGCCAGGTAAAGTCACTGATGTATATGtttcacacaacaacaacaaaaagactaAACATAACAGCCTGATAGGACCAGATCCTATCCTTTTAGAGAAATGCCTGTGACTGGAATTTACCTTAACACATCTGCCATTTTAATCAATGTCTGGTTGTGATAAAGTTCAAGTCACAAAGGTGTGTATGAAGAGAGGATCTCTAATCAGATTTTTCAGATTATAACAATATTTGAAATTTATTTACCTTAACTTCTTTGTTGTGTATAGTTGCAGTTGTACAGATATATTGTATAGATGTATATTTATTAATAAATTGAAGACTTTAT

Function

GO: NA

KEGG:

id description
K24338 CNTNAP5; contactin associated protein-like 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2072202 lncRNA downstream 5802 41792434 ~ 41792652 (-) True G1811279
TU2072162 lncRNA downstream 33626 41764627 ~ 41764828 (-) True G1811240
TU2072087 lncRNA downstream 152188 41646002 ~ 41646266 (-) True G1811169
TU2072083 lncRNA downstream 155462 41642769 ~ 41642992 (-) True G1811165
TU2071928 lncRNA downstream 207956 41589230 ~ 41590498 (-) True G1811025
TU2072373 lncRNA upstream 11078 41910818 ~ 41911038 (-) True G1811439
TU2072469 lncRNA upstream 75604 41975344 ~ 41976554 (-) True G1811529
TU2072471 lncRNA upstream 85392 41985132 ~ 41985474 (-) True G1811531
TU2072473 lncRNA upstream 90559 41990299 ~ 41990611 (-) True G1811533
TU2072495 lncRNA upstream 112037 42011777 ~ 42011996 (-) True G1811555
XM_021579998.2 mRNA downstream 31276 41764963 ~ 41767178 (-) True LOC110502131
XM_021579742.2 mRNA downstream 54630 41668896 ~ 41743824 (-) False LOC110501888
XM_021579743.2 mRNA downstream 54630 41702596 ~ 41743824 (-) True LOC110501888
XM_021579741.2 mRNA downstream 173658 41622821 ~ 41624796 (-) True LOC110501887
LOC110502151 mRNA downstream 185318 41612562 ~ 41613136 (-) True LOC110502151
XM_021579753.2 mRNA upstream 692478 42592218 ~ 42603449 (-) True LOC110501896
LOC110502155 mRNA upstream 704258 42603998 ~ 42605768 (-) False LOC110502155
XM_021579754.2 mRNA upstream 840879 42740619 ~ 42748559 (-) False LOC110501897
XR_005038838.1 mRNA upstream 841518 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA upstream 841518 42741258 ~ 42748561 (-) False LOC110501897
TU2071948 other downstream 193223 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 332807 41447899 ~ 41465647 (-) True LOC110501886
TU2070925 other downstream 985067 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 2853924 38944136 ~ 38944530 (-) False G1808299
TU2073040 other upstream 487082 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 704963 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 777517 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 2610667 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 2773707 44673447 ~ 44673888 (-) True G1814480

Expression Profile