RNA id: LOC110502155


Basic Information

Item Value
RNA id LOC110502155
length 1771
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110502155
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42603998 ~ 42605768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAAGTTAGAAAAAAGCTCTTAGCACTTAGCAGACATTTCACTTGTCAATTCGCCGTAGTATTCAACTTACGATGTCGGAAAACATGTCAGCAGAGGTAGAGCGATCAGAAAGATCAGATGGCAAGCTTGTGAAGATGGAGATTGACTACAGTTCAACTGTAGATACAAGTCTACCGGAGTGTGCCAAAATGGCAAAAGAAGGTAGGTTGCAGGAGGCCGTTGAAAGCCTCTTGTCGCTGGAGATGCAAACAAGAACGGCTTCTGACATGGTGTCAACCTCCAGAATCCTGGTGGCCGTTGTGCAGATGTTCTATGAAGCGAAGGACATGGATGCCCTGAATGAAAACATCATGCTGCTCTCTAAAAGGAGGAGTCAGCTCAAAGGGGCTGTTGCTAAGATGGTGCAATAATGTTACAAGTATGTAGATACCGTGACCGACCTGACCGTTAAACTGAGACTCATTGACACACTACGCACAGTGACCGCTGGAAAGATCTATGTGGAGATTGAGCGAGCCAGGCTGACAAAAACAGTGGCAAACATCAAGGAGCAGCATGGCGAGGTCAAAGAGGCCGCAGCAATCCTCCAAGAGCTGCAGGTGGAGACATACGGCTCcatggagaagaaagagaaggtgGAGTTTATCTTGGAGCAAATGAGACTGTGCATCGCTGTCAAGGACTACATCTGCTCCCAGATCATCAGCAAGAAGATCAACACCAAGTTCTTTACAGAGGATGGCCCCGAGGAGTCTAAGCTGAAGTATTACAATCTGATGATCCAAGTGGACCCGCACGAGGGATCCTACTTGTCCATGTGCAAACACTACTGTGCCATCTATGATACCCCCTGCATTCTGGAGGATAGCTCCAAATGGCAACAGGCCCTGAAAAGTGTTGTTCTGTATGTGATACTGGCTCCCTACGACAACGAGCAGTTAGACCTGGTGCACAGAATCAACGAAGACAATAAATTGGAAGAAATACCCAAATACAAGGACCTCCTGAAGCAGTTCACCACCATGGAGCTAATGCGTTGGGCCTCCCTGGTGGAGGATTATGGGGAGGAGCTGAGGGAGGGCAGCCCGGCCACCGACGTATTCAACTTCTCAGAGGAGGGCGAGAAGAGGTGGAAGGACCTCAAGAATAGAGTGGTGGAGCACAATATAAGAATTATGGCCAAATATTACACAAGAATCACAATGAAGAGGATGGCTGGCCTCCTGGACCTCTCCAACCTGGTGGTGAACAAGACCATCTACGCCAAGGTGGACAGGCTAGCCGGCATCATCAACTTCCAGAGGCCGAAGGACCCCAACGGACCTGCCCAACGACTGGTCCCACAAACTGAACTCCCTCATGTCCCTGGTCAACAAAACCACACATCTCATCGCCAAAGAGGAGATGATACACAACCTGCAGTGATGAGGACCGAGTGCATTGTTTTCATAAAAAAATCTAATGTTCTTCTGAATTTATATTGATGAATGAACCATTTACAATAAACAAGTCTTACATGTTCTTATATGTTGTTACTATCTCTTGTCCCACTGATGTAATGTAAATTACATTGTTTAGAGTGGTCTCCCAATTGTATCTACTACAACAATCTGTACTTTGTTCTAGAACCTAGACCACAGAGGGGCATACACTGTTAATGTTTTCTCTCCTGTTCCAACTCTCTTTTTCATGTAACCGTCATAAGGGATTTAGTGTTAGAGCATTTGCGTGCAACTTGCTGTATTAAAAcatttactgtaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073337 lncRNA downstream 12864 42589367 ~ 42591134 (-) True G1812346
TU2073335 lncRNA downstream 15443 42588303 ~ 42588555 (-) True G1812344
TU2073331 lncRNA downstream 20562 42583067 ~ 42583436 (-) True G1812340
TU2073325 lncRNA downstream 32143 42568217 ~ 42571855 (-) True G1812334
TU2073256 lncRNA downstream 123536 42480247 ~ 42480462 (-) True G1812279
TU2073353 lncRNA upstream 1823 42607591 ~ 42608500 (-) True G1812352
TU2073401 lncRNA upstream 55810 42661578 ~ 42661930 (-) True G1812395
TU2073513 lncRNA upstream 82442 42688210 ~ 42688979 (-) True G1812491
TU2073542 lncRNA upstream 90454 42696222 ~ 42696512 (-) True G1812495
TU2073547 lncRNA upstream 96962 42702730 ~ 42703286 (-) False G1812500
XM_021579753.2 mRNA downstream 549 42592218 ~ 42603449 (-) True LOC110501896
XM_036959343.1 mRNA downstream 704258 41798454 ~ 41899740 (-) True LOC110502152
XM_021579998.2 mRNA downstream 836820 41764963 ~ 41767178 (-) True LOC110502131
XM_021579742.2 mRNA downstream 860174 41668896 ~ 41743824 (-) False LOC110501888
XM_021579743.2 mRNA downstream 860174 41702596 ~ 41743824 (-) True LOC110501888
XM_021579754.2 mRNA upstream 134851 42740619 ~ 42748559 (-) False LOC110501897
XR_005038838.1 mRNA upstream 135490 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA upstream 135490 42741258 ~ 42748561 (-) False LOC110501897
XR_002470270.2 mRNA upstream 135490 42741258 ~ 42748577 (-) True LOC110501897
XM_036959351.1 mRNA upstream 164485 42770253 ~ 42797492 (-) False LOC110501898
TU2073040 other downstream 214725 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 998767 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1138351 41447899 ~ 41465647 (-) True LOC110501886
TU2070925 other downstream 1790611 40736648 ~ 40813387 (-) True LOC110501878
TU2068898 other downstream 3659468 38944136 ~ 38944530 (-) True G1808299
TU2073410 other upstream 71489 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 1904639 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 2067679 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3232982 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4619783 47225551 ~ 47226646 (-) True G1816841

Expression Profile