RNA id: XM_021579754.2


Basic Information

Item Value
RNA id XM_021579754.2
length 1913
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110501897
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42740619 ~ 42748577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCTACACTTTGTGGATTTGGTGCAGAAGAGCCTACCCTGCGTACACCAGCGATTGCGGGTACAGTTGCTACCAACCATGGTATTCCAAATCCTGGTATTATGGTTGTGTCTCAACCTGCCTACAGCAAACTCAGGGTCAGTATGGCGTATTGTGTCTCGTCCGTGATCTCGAAGTGACTTTCATTTATAACCTGCACCAGTACAGTCTGCCTGGATATAAGTGAGGATGTGTACAACGGGATTTTTCAGCCAATCGCGCTTGTCCAAAGTTGATCTCGTTCCCTTAGATAGTTTTTTCTTCTATTGAGGTAACCAGAAGTTACTGCTAGGCTATGTCTGATTGTTTTAAATATGTATACCGTTTCAAATAGGATTGTTCATATTTCTACCTTATTGGTAACGTATTTGATTCCCATGACATGCGCAGcTACCCATTCCCTGAAGTATTTCTACACAGTGCTCCCACAGTCTACTGGCCTTCCAGAGTTCAGCGCTGTTACTTATCTGGACGAGGAACCAATTTATTTCTATGACAGTTCTACAAAGGAAGTGGTAGCTCGACAGGAGTGGGTAAAAGAAGCCGTGGATCCAGACTTCTGGAGAAGAAATACACAAATTCTTAAGGAGACTGAGAAGGTGTTAAAAAACAACATGGCCACTGCAAGAGATCGCTTCAACCAGACAAGTGCCCGTACATTGCAGGTAATGTACAGCTGTGAGTGGGTTGAGGAAACTGGTGCTACAGAGGGACATGAACAGTATGGATATGGAGGAGAGGACTTCCTGTTATTTGATCTGAAGAATGAAAGATGGATTGCACCTGTTCGGCAGGGACACATCACCAAAATAAAGTGGGACGCTAATGTTCCTAAACTTAAAGCCAAAATTCACTATCTAACCCACACATGTAATGAATGGCTGAACAAATATGTTTCCAATCGGAGACGCATGCTGCAGAGGACagTCCCACCGCAGGTAACTTTGTTTCAGAAAGAACCCTCCTATCCTGTGACCTGCCATGCAACAGGGTTCTATCCGAACGCAATCATGATATTTTGGAGAAGAGATGGGGTAGAAGTCCATGGTGTGGATGTGGTGCATGAAGAGACCCTGCCTAACGGGGATGGGACGTATCAGAAGAGAACCCATCTCGCTGTGTCCCCTGAAGACCTACAGAAGCACGACTACAAATGCACTGTCAAACACAGCGGCAATGATGTGGTTCTGTCTGCTAACAGGGACAGCATTCGTGGCAACAGCAGGAATACTCAGGGGgtttccatcatcatcatcactatcaacaTGGTCTTGATATCGGTCATATTGGCCTTCAGTGTGATTGTGCTTGTCTTAAAGAGAACGATGTACTGCAAAGGAAAAGAACCATCAACTGGAAAGGAAAAACAATGTCCAATAAGTCGCCTGGAAAAGAATGTTCTTCTGCTCAACAATTCAAAACCTGCTGAAATGGAGAAATCAAAATTGAGCCATTCAGCTGATACTCTCCAGTGCCCGACTCAAGATACGACAGGTTCCGACAGAAGCAGAACAATTTCCTCAGGCTCTTCTGTCGGCTCTGATGACTCTGGAGACTCTACAACTCCTTTTGTCAAGAAACTCTAGCTCGACTGCAGTTGGAAGGCTGTCTTCTTTTGTGATCTTGGACACCTGAATTATCCGTGGAGTTACAAAATAGAGTGTTTGGAATTTGTTATTTCAGTATATTGGCTACCATACAAAGCTCTCAAACTGCTAATGTATGCAaaaggtgtgtgtgggggggcagtGTAAATTGTTAAGGACAACCAACCCAATTGGCAATTGTATCGGGACTCTGgagtaactccctggctattttaattGAATGTTCAAATTTGACTTTGTGTGTCAACtataaactgttacagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073568 lncRNA downstream 14919 42725200 ~ 42725700 (-) True G1812517
TU2073567 lncRNA downstream 15871 42724530 ~ 42724748 (-) True G1812516
TU2073563 lncRNA downstream 19316 42720973 ~ 42721303 (-) True G1812512
TU2073562 lncRNA downstream 20101 42720287 ~ 42720518 (-) True G1812511
TU2073561 lncRNA downstream 20775 42719627 ~ 42719844 (-) True G1812510
TU2073575 lncRNA upstream 371 42748930 ~ 42749268 (-) True G1812523
TU2073586 lncRNA upstream 27606 42776165 ~ 42777549 (-) True G1812531
TU2073621 lncRNA upstream 109072 42857631 ~ 42857840 (-) True G1812565
TU2073630 lncRNA upstream 113567 42862126 ~ 42862341 (-) True G1812574
TU2073645 lncRNA upstream 123292 42871851 ~ 42872125 (-) True G1812589
LOC110502155 mRNA downstream 134851 42603998 ~ 42605768 (-) False LOC110502155
XM_021579753.2 mRNA downstream 137170 42592218 ~ 42603449 (-) True LOC110501896
XM_036959343.1 mRNA downstream 840879 41798454 ~ 41899740 (-) True LOC110502152
XM_021579998.2 mRNA downstream 973441 41764963 ~ 41767178 (-) True LOC110502131
XM_021579742.2 mRNA downstream 996795 41668896 ~ 41743824 (-) False LOC110501888
XM_036959351.1 mRNA upstream 21694 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA upstream 21694 42770253 ~ 42797492 (-) True LOC110501898
XM_021579756.2 mRNA upstream 52461 42801020 ~ 42823612 (-) True LOC110501899
XM_021579758.2 mRNA upstream 301845 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 310990 43059549 ~ 43067135 (-) True LOC110502158
TU2073410 other downstream 62859 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 135599 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 351346 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1135388 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1274972 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1761848 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1924888 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3090191 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4476992 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4652563 47401122 ~ 47402047 (-) True G1816929

Expression Profile