RNA id: XM_036959352.1


Basic Information

Item Value
RNA id XM_036959352.1
length 5768
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110501898
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42770253 ~ 42797492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCCCGTATTGCGGCCCGCAATCACACACTACTAGAGCTTCAACGACTAAACAATAGCAACCATCCTGAGTGAATTAGCTAGCTACAGAGAATAATTTATATAGGAATCAAGGTGGCAGCACTAGTGAAAATCCTAGCATCTGCAAAACTGAAACAAATCCGGAGATCCAACCCACGGCGAAATCAGAAGTCTGATTTAGCTGAAGCCAGGAGCTGAAGGTGATGATATCTCTCAGGGAAGAGGAGAGCTAGACTACGCAGCACTAGCAAGATCTGTAATACTGAGTGAAGGGCCGTGCGAGAGGGACTTATAAAAGAGAACCCACCTTGCTTGgtTGTCGTAGTGTGCAGAGGAGAGGAGTGCTcctcagtagtagcagcagccatGGGCCTGGTAGCTTACCTGAAGACCCAGTTTGTTCTGCAGCTCCTCCTGGGTTTTGTGTTCGTGGTGAGCGGCCTCCTCATCAACTTCATCCAGTTGTTGACGTGCGTCCTGTGGCCCATCGACAAGCAGCTGTACCGCAGGATCAACACCAGGCTCTCCTACTCCCTCTGGAGCCagcTGGTGATGCTGCTGGAGTGGTGGTCGGGAACACAGTGCACCCTCTACACAGATCAGGCCACGGTGGACAAGTTCGGCAAGGAACACGTCATCATCATCCTCAACCACAACTATGAGATTGACTTCCTGTGCGGCTGGACTATCTGTGAGCGATACGGAGTCCTAGGGAGTTCCAAGGTGCTGGCCAAACACGAGCTGCTGAAGGTGcctctgattggctggacctggtATTTCCTGGAGATCGTGTTCTGTAAGAGGAagtgggaggaggacagagagaccgtGTTCAGAGGGCTAGAAAGACTCAGAGACTACCCTGAGTTTATGTGGttccTGCTGTACTGTGAAGGCACTCGCTTCACAGAGAAGAAGCACCAGATCAGTATGGAAGTGGCAGAGAGTAAAGGCCTGCCCAAGCTCAAATACCACCTGCTGCCCAGAACCAAAGGCTTCACCACCGCACTCAAATGCCTCCAGGGCACAGTGTCTGCTGTGTATGACGTCACACTGAACTTTAAAGACCACCAAGTCCCCACTCTGCTGGGCATCATCAACGGCAAGAAATACATGGCCGATATGAGAATCAGGCGGTTCCCTGTAGAGGAGATCCCAGAAGATGAGAAGGAGTGTGCCAACTGGCTTCATAAACTCTACCAGGAGAAGgatGCTTTGCAGGAGCACTACCATAAAGAGGGCACGTTCCCGGGTCCCACCATCACCCCTCCTCGCCGGTTGTGGACGCTACTCAACTTCCTGTTCTGGGCGGCCCTGCTGCTCTCACCCCTCATCAACTTCGCCTGCGGGGTGGTGGTCAGCGGCTCCCCCCTCCTCATCCTCGGCTTCAGCCTCTTCCTCATCGTAGCCTCCATAGCCATCCGGCGCCTGATCGGTGTCACCGAGGTAAAGAAGACAGGCTCCAGTTACGGCGACGAGGGGTCCAAGAAACAGAACTAGACCTCTACCTCCCCCCTGTTGGTTGCTGTACGGTCCTCCTGCGGTTCCCCTCCCTCTATTCTGTTGTCCTGCAGGTGCAGTCAGCATGCCGGGGAGGGGGCCAAACCATTACACCTAGAGATAAAACAGATCTGGATGGGACCAAACCATTACACCTAGAGATAAAACAGATCTGGAGGAGGCCAAACCATTACACATAGAGATAAAACAGATAGATCTGGGTGGGACCAAACCATTGCACCTAGAGATAAAACGGATAGATCTGGAGGGGGCCAAACCATTACATCTAGAGATAAAACAGATAGATCTGTAGGGTGCCAAACCGTTACACCTAGAGATACCACATATAGATCTGGAGGGAGCCAAACCATTACACCTAGAAATAAAATGGATATATCTGGAGGGGGCCAAACCATTACAGATAGATAAAACAGATCTGTAGGGGGCCAAAACATTACACCTAGAGATAAAACAGAGAGAtctggagaaagaaagagagagagcgttaTGACCATGGAATgagtgtggagagggagagagaaaggaagacgGTCTGGAGCCAGCTCTCTGTGGAGTAGGAGAGGGCAGAAGGAGAGGCTATTGACCAGGCTCTTTGCCCCCTTAACAACTCCCTCGGATGTCCCCGGCCACGCCCACCCTTCACCTCCTGACCACTGGGGTCCTCACCACCGGACAACTAGTCAGCTCACCACACAGAAACAAGCCCACTTCCTGTTCTGAGCTAACCACTTCCTTTTCCTGTCACATGCTCTGGTcctttttttttgttctttttttttttgaggtggTGTTACTCGTGTTCACCTcttgtaacaacatacagtacatctccCCCTCGTTTTACCAAATGACTGGACTTCAAATGGGAACCAGTTTCTTGAGGCTCAGCCTGGTTTCCACTTTGCTTTTAACCTCTAAGAAAAAGGTGTTTATTTTTTCACTGTGCTTCCTATCTCTGCTGTGGGAGCCCGCCCCCTTTTATATTTGTTGTCCAGATTCCAAATCAAATATAATGGGGCGTTTCCATGATTCTACAAGTCTATGCATTCTGGTCACTGTTGAATATTACCACGGCACTTATTTTCATCTGGGCTATGTACAACAGCAGAGATGGGACTTCCAGTGTTTTAAATACTGAGGCAGGTTTCTGTGTGTTAAGACTACAGTAAAGGGCTCTGTATTCATTAACTACACACTAATTAACTACTTACTAACATTTTGTTATCTTTGACATGATATTTGACTCCACTGTTCCAACGCCCTCAAGTTCTGActaattattattttatatagGCTTTTTTCCCCATTCTCCCATGCTTGCTCGCAAGTAGATGTCTGCACACACATTAACATGCCATTTTATGACTAGCCAGTTCCTGAGTGAACTTCTCTTCTTCTGTTGTCTCCGCTCTGTTTTTACACAGCTCAACCACCCCTGGTGTCTTTACACAGCTCAACCACCCCCGGTGTCTTTACACAGCTCAATCACCCACGGGGTCTTTACACAGCTCAACCACCCCTGGTGTCTTTACACAGCTCAACCACCCCCGGTGTCTTTACACAGCTCAACCACTACCGGTGTCTATACACAGCTCAATCACCCACGGGGTCTTTACAGAGCTCAACCACTCCAGGTGTCTTTACACAGCTCAACCACTCCAGGTGTCTTTACACAGCTCAACCACCCCCGGTGTCTTTACACAGCTCAACCACTCCAGGTGTCTTTACACAGCTCAATCACCCACGGGGTCTTTACACAGCTCAACCACTCCAGGTGTCTTTACACAGCTCAACCACTCCAGGTGTCTTTACACAGCTCAACCACCCCCGGTGTCTTTACACAGCTCAATCACCCCCGGTGTCTATACACAGCTCAACCACCCCCGGTGTCTTTACACGGCTCAACCACCCCCGGTGTCTATACACAGCTCAACCACCCCTGGTGTCTTTACACAGCTCAACCACCCCCGGTGTCTATACACAGCTCAACCACCCCTGGTGTCTTTACACAGCTCAACCACCCCCGGTGTCCTTACACAGCTCAACCACTCCAGGTGTCTTTACACAGCTCAACCACCCCCGGTGTTTTTACACAGCTCAACCACCCTCCATGTCAGTGTGACTCTTATAATAACCAATTCCAGTCAAAACAGACTATAACCCCACCTACCCTTTTATAGTTGAAATGCACTAGCTACTGATTCTCTCCAGCTGTAGACTCTAGTAATGTTTGCCTCTGCAAGGGTGACTGTTTGATTGGTTACTAAGTTCTCATCGGCTAAGGTGATTGTTTGAGTGGTTACACCGTTCCTATTTCTTAGGCTAGGGTGATTTGATTGGTAACTAAGATCCCGTCCTACCTCATCTCTTAAGCAAGGGTGATTTGATTGGTTACTAAATTCCATTCCTACCTCATCTCTTCCTCTACTAAAGTCTTGGTGCACTGTGGGTAGTTGAATATTCTCCATGTTAGTTCTGGCATGTTTATTAGGCCCTGGTGTATGTTGACATGGTGCAGGAGCAAAAGGATCTTATTGAATTGCAATTACATGTGTCATTTAACAGAAGCTctaatccagagcaatttacaatACCGTCCCTAACAGTACTGTTCTACATCTCAGTAGCCAGCATGAATGTGTTACATATGTTACTAAACGCTGCTTCCAGGTCCTGAGCTGCACAGGAAGGAGGTTTTTGCCCCGTTGTTTATTTTCTTGCTGCTATTCCCTGCATGCTACAGCACCACCCTGAGCTCAGGCACTGCAACTGCACTTGCTTTCCAACACACCTGCACTTGCTTTGAACACATCGCACATTGTTTATCTATTTACACTCCGATGAGTGTAAATGGGAGGGTGCTGACTTTCCTTTACAAACTGGGATTGGCATGAAAGCAGGTGTCAGATTACAGGTGACTGGTATTTCCTGAGTGCAACATGCAAACATAGCAGCAACACGTCGTCGTCATcccttgtctggagaagacacccagtctgttacaacATCACCAGCTTTTCACCGTGTGTTGTTGATGTCCTTTGTTcccattttattttattgtagcgtttaaatgttttttttttaaccaggacAGATTCATACAAGCCTTAACAGAGTGCAGCTTCATTATATTGTGTGAATTTAGGCAGACCACGCTTCCTCAGACCCCTTATAGTACATTTGGATTGGCAAGTGGTGTGGGAGACTGAATTAGTAAGGTTCACATGCATCTGCCCTCTgtttaaaaaagaaaaataacTCCTGTTTATTTCTCAATATAGAATCCTGGAAACaagtatttttttgggggggggttagtGTTAAGGCTGAAGAGATGGGGGTTCCATGAGAATCTGCTGATTGTTACAGTAATAGTTAAGAGGGCCCCATTTTTAGTAATAGACTCCGTGTCCCATGATGCTTCTGTGTTCGATACCTCTTACAACTCCTGTTAAATCTCTCAACTGTCAATACAATTGCTTCAGTAGCTTTAGAGAGATCTGGGCCCACATCCACAGAGTCTaacagtaggagtgctgatctaggatctttccatatattcttattaattctgatctaaaaggctaaactgatcctatatcagtCCTCCTGCTCTGAGAGGCTTTGTGGGTATGGGCCCTGTTCTAAGTTGTGGGGCATACGTTTTATATCATCTTCAGTGTCCTTCCCATACTGTAATTCCAAACTACAGTACCCATCAGGCACTGGTGCAGTCCCACCACTCCCTCAGGTAACTATCAGTCAAcagtgtttacacaggcagcccaattctgatatttttttcactagttggtcttttgaccaatcggaTCAGCTCTGAAACAGATTTGATGTGAAAAGGCCAATTAGTGGAGAAACGACCCAaattggactgcctgtgtaaacgcagcctatggTGTATCTATTCCAGAGCAACAGGACAAATGCAGAGAAGTTAACACTATTTGACATTTTCTAACACTGGAGGTTTGTACTGCAAAAAAATCCCACTAATTTCTGATTTTCTTATTTTTGTTAAAGTTCTCGAAACTAAAGAAACAAGTAACGGTAGAAATTCATCACTGAAATTTGAACCTTTTTTGGCATGAAAGTTGTTAAAGTTGCATCTCGACTCAACTTACATTTGTCTTTTTTCTAAGTCTATTTGTATCTGTTGTTTCTTTAAGTAAACAATTAAGAATATTAAAGGATTTAATCAGGCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073575 lncRNA downstream 20985 42748930 ~ 42749268 (-) True G1812523
TU2073568 lncRNA downstream 44553 42725200 ~ 42725700 (-) True G1812517
TU2073567 lncRNA downstream 45505 42724530 ~ 42724748 (-) True G1812516
TU2073563 lncRNA downstream 48950 42720973 ~ 42721303 (-) True G1812512
TU2073562 lncRNA downstream 49735 42720287 ~ 42720518 (-) True G1812511
TU2073621 lncRNA upstream 60139 42857631 ~ 42857840 (-) True G1812565
TU2073630 lncRNA upstream 64634 42862126 ~ 42862341 (-) True G1812574
TU2073645 lncRNA upstream 74359 42871851 ~ 42872125 (-) True G1812589
TU2073647 lncRNA upstream 76140 42873632 ~ 42873868 (-) True G1812591
TU2073649 lncRNA upstream 77222 42874714 ~ 42875584 (-) True G1812593
XR_002470270.2 mRNA downstream 21676 42741258 ~ 42748577 (-) True LOC110501897
XR_005038838.1 mRNA downstream 21692 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA downstream 21692 42741258 ~ 42748561 (-) False LOC110501897
XM_021579754.2 mRNA downstream 21694 42740619 ~ 42748559 (-) False LOC110501897
LOC110502155 mRNA downstream 164485 42603998 ~ 42605768 (-) False LOC110502155
XM_021579756.2 mRNA upstream 3528 42801020 ~ 42823612 (-) True LOC110501899
XM_021579758.2 mRNA upstream 252912 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 262057 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 301840 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 356295 43153787 ~ 43159661 (-) True LOC110502159
TU2073410 other downstream 92493 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 165233 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 380980 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1165022 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1304606 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1712915 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1875955 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3041258 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4428059 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4603630 47401122 ~ 47402047 (-) True G1816929

Expression Profile