RNA id: LOC118943590


Basic Information

Item Value
RNA id LOC118943590
length 572
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC118943590
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43493285 ~ 43498392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgacggaaGTCAATTTGTTGAAtattacaacacaaccatgtctAGAGAAAAAAGTGAACAGTGAGGCCACTGACTGTTTCCCAGTTGATGAGTACAGTAGGAAGTACTATCTCCCGGTCACGTATGGGATCATCTTTTGTATTGGGGCTTGTGGGAAACATCACCTCAATCATTATCTACGTGGTCAGGTTGCAGCCATGGAAGAGCAGCAGCATGGTGAACCTCGCCGTGGCAGACCTCCTGTACGTCCTTCCTGGTCCACCACTACATCCAGGACGACTGGATCATGGGCGACGTCATGTGTCCCATTGTCTGCTTTAGCTCTCACTTCAACCTCTCCTACTTTAACCTGTACGGCAGCATTCTCTTCCTCACCTGCCTGAGTGAGTTCCACTATGTGGTCATGGTCCACCAGGTGAGGGCAGCCCAGGTACAGAGGAAGAGCTGGGCTGTCACAGACTACTCGGCTGTATGGGTCATATCTATATTGGAGATTACAACCATGGTCTACATGACAACTGTGGAGAAGACTGAGAACGTCATTTAtTCCTGGGATACCTACTCCCCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075150 lncRNA downstream 6948 43428127 ~ 43486337 (-) True G1813905
TU2075147 lncRNA downstream 66292 43424697 ~ 43426993 (-) True G1813904
TU2075138 lncRNA downstream 80161 43412916 ~ 43413124 (-) True G1813898
TU2075137 lncRNA downstream 81065 43411914 ~ 43412220 (-) True G1813897
TU2075132 lncRNA downstream 85389 43407673 ~ 43407896 (-) True G1813892
TU2075202 lncRNA upstream 3426 43501818 ~ 43502253 (-) True G1813953
TU2075203 lncRNA upstream 3909 43502301 ~ 43502577 (-) True G1813954
TU2075205 lncRNA upstream 6255 43504647 ~ 43504901 (-) True G1813956
TU2075207 lncRNA upstream 9217 43507609 ~ 43507818 (-) True G1813958
TU2075209 lncRNA upstream 11214 43509606 ~ 43509846 (-) True G1813960
LOC110502159 mRNA downstream 333624 43153787 ~ 43159661 (-) True LOC110502159
XM_021579759.2 mRNA downstream 391636 43099332 ~ 43101649 (-) True LOC110501903
LOC110502158 mRNA downstream 426150 43059549 ~ 43067135 (-) True LOC110502158
XM_021579758.2 mRNA downstream 436811 43050404 ~ 43056474 (-) True LOC110501902
XM_021579756.2 mRNA downstream 669673 42801020 ~ 42823612 (-) True LOC110501899
XM_021580017.2 mRNA upstream 87567 43585959 ~ 43587743 (-) True LOC110502160
XM_021580018.2 mRNA upstream 113157 43611549 ~ 43612567 (-) True LOC110502161
XM_036959595.1 mRNA upstream 169511 43667903 ~ 43669453 (-) True LOC118943640
XM_036959079.1 mRNA upstream 182277 43680669 ~ 43681964 (-) True LOC118943591
XM_036959080.1 mRNA upstream 191279 43689671 ~ 43690838 (-) False LOC118943592
TU2073410 other downstream 815525 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 888265 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 1104012 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1888054 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 2027638 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1012015 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1175055 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2340358 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 3727159 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 3902730 47401122 ~ 47402047 (-) True G1816929

Expression Profile