RNA id: XM_036959081.1


Basic Information

Item Value
RNA id XM_036959081.1
length 1120
RNA type mRNA
GC content 0.35
exon number 1
gene id LOC118943593
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43767470 ~ 43768589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGAACATGAAGATATTCAATACTGTTTTCAAGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGATATCTATCTACATAACACTGTACATCTTCTTCTCAGTGATTTCAGCAGTTACAGTATTTTTGAACGTACTGGTGATCATCTCCATCTTTCACTTCAAGCAACTCCACACTCCAACCAACCTGCTCATCCTCGCTCTGGCTGCATCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAATGACTGTAGCAATAATTGAATCATGCTGGGGTTTTGGGAAATATTTCTGTGCGTTTCTTCTCTACATTACTTGTTTATGTACTTCTTTATCTCTGGGCAGTTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTTATCCCTTATTGTACCActctaaaataacaataacaagaatGATGTGTTGTATATCAATTACCTGGTGTTGTTGTACCATTTACAATGCTGCTATTATAAAAGACATTGTAAATGTACAGGTACCCAGTcggtgtttgaatgaatgttttatTGTCGTAGGAATAACCTGGGGAAATATAATTGactttgtatttacaatggttgtCCCATGCTCTATTATTATAACACTTTATTTGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAATGTGTCTGGTGTTAAAACTGTACAGGCAAGTAAGTCTGAGAGAAAAGCAGCAAAAACTCTGTCTATTGTTGTTTTCAACTATTTCATTTGTTGGATTCCATTTCTATTTTCTTTTTTCTTTGTTTCTTTTTTAAGTGACAATTTACTATCATTCATCCTCAGCTTTCTGCCACTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACTGCTAAACATATTTTAACTCTGAAGTTAAGGTGTTCGTAGTTCCTGTATTTGTATTtctaagtttaaaaaaaaaggtttgaCATAGTTTTGTTATACAATTGTTCTTTCATGTAACAATACACTGACAATACATAGATGAATGTGGTGTTGATACAGAATGATTTGGCTGGATTGGATTGGAATGACTTGAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075305 lncRNA downstream 74808 43689511 ~ 43692662 (-) True LOC118943592
TU2075273 lncRNA downstream 127242 43633497 ~ 43640228 (-) True G1814021
TU2075250 lncRNA downstream 189632 43577242 ~ 43577838 (-) True G1814001
TU2075248 lncRNA downstream 194553 43570568 ~ 43572917 (-) True G1813999
TU2075187 lncRNA downstream 217584 43546550 ~ 43549886 (-) True G1813938
TU2075354 lncRNA upstream 93994 43862583 ~ 43862961 (-) True G1814092
TU2075378 lncRNA upstream 140993 43909582 ~ 43944371 (-) True G1814114
TU2075413 lncRNA upstream 247095 44015684 ~ 44018130 (-) False LOC118936581
TU2075414 lncRNA upstream 247095 44015684 ~ 44018130 (-) True LOC118936581
TU2075464 lncRNA upstream 281134 44049723 ~ 44050244 (-) True G1814187
XM_021580001.2 mRNA downstream 33801 43732486 ~ 43733669 (-) True LOC110502134
XM_036959080.1 mRNA downstream 76632 43689671 ~ 43690838 (-) False LOC118943592
XM_036959079.1 mRNA downstream 85506 43680669 ~ 43681964 (-) True LOC118943591
XM_036959595.1 mRNA downstream 98017 43667903 ~ 43669453 (-) True LOC118943640
XM_021580018.2 mRNA downstream 154903 43611549 ~ 43612567 (-) True LOC110502161
XM_036959596.1 mRNA upstream 30987 43799576 ~ 43800754 (-) True LOC118936360
XM_021580021.2 mRNA upstream 117692 43886281 ~ 43887278 (-) True LOC110502164
XM_021580023.2 mRNA upstream 185062 43953651 ~ 43955514 (-) True LOC110502166
XM_036959083.1 mRNA upstream 238636 44007225 ~ 44009175 (-) True LOC118943594
XR_005038841.1 mRNA upstream 245824 44014413 ~ 44018572 (-) False LOC118936581
TU2073410 other downstream 1089710 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 1162450 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 1378197 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 2162239 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 2301823 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 741818 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 904858 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2070161 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 3456962 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 3632533 47401122 ~ 47402047 (-) True G1816929

Expression Profile