RNA id: XR_005038841.1


Basic Information

Item Value
RNA id XR_005038841.1
length 1052
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC118936581
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44014413 ~ 44018572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATATTTTTTTCAACATAAATTTTTGCGTCTGGGATTTTAGAACTATTTCATATAAACTCTGTGTTTCATATTGGCTTGAACCTGGCAAGCCATTTTGATAACTGCGCAAATCTCTCAGACATGGTAAATTGTATCAATATATTCACGTGTAATTACCTCCAAAATGAAATGCCAGTGGGACTTTCATAAAGAACTACACATCTTGTCGCAAAGTATGACGTCAAACCCTCAAGGCACAGTTCTCCACGCAAACTCCTCGACAAGTAGCCTAGCAAGAAACAGATATTATAGGCGTTTTAGTTTCTCGTGTGTATATCGCTTGCTACCTTAACGTCATTGAATTACTATAATTAATAAGTTAGCCTCTGCAGATAACTAGCTAACCTTAGGTCTCTACGTCGACCAGAAGCAAGGATGGTTCTGTGCTATGTAACGTGACCGGATTGTAACCACTACTCCAATAAGCACATGCACATTTTATCGTTTTCCAACCTCTAAGTGAGAGGCATCGCTAGAGCTGTGTGATAAGatGGACGGACCAGAAACCCAGTGACACTCGGGTCTGTAGCTGCCATTTTCCAGTGGGAAATGTCTTTCAGATGGACGGACCGGAAACCCAGTGACAACACTCGGGTCTGTAGCTGCCATTTTCcagtgggaaagagagatggcTCTGTATTTACCAGAGTAGGTAGTTCATCCATCATGGTGGATGAGGAAGATCCAGACTGTGTATTGGGAATCAAAAACAAACCAATAGGATTGAGTGTCCAAAAGGAGTGAATCCCTCAGGCTATCCGGTGCATAGACATCCTGTGTCAGTGTGATCTGGTTGTGGAGACGACAGCAGATCGGGCCTGTGGACAGACAGACAGGAGGCGTGACATGTGGAACATCAGGCACTCACCATGAGAAGCAGTGCATGATCAACACCAGCCTCAGCAAGGAGATCTTGTCATGGCTGTTGAAGGAGGGGGACCAAGGTGCaacgtgTTCCCAGatatgctgagcagttgttggctgcttgtccttcactctgcggtccaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075378 lncRNA downstream 70042 43909582 ~ 43944371 (-) True G1814114
TU2075354 lncRNA downstream 151452 43862583 ~ 43862961 (-) True G1814092
TU2075305 lncRNA downstream 321751 43689511 ~ 43692662 (-) True LOC118943592
TU2075273 lncRNA downstream 374185 43633497 ~ 43640228 (-) True G1814021
TU2075250 lncRNA downstream 436575 43577242 ~ 43577838 (-) True G1814001
TU2075464 lncRNA upstream 31151 44049723 ~ 44050244 (-) True G1814187
TU2075484 lncRNA upstream 75812 44094384 ~ 44094911 (-) False G1814207
TU2075485 lncRNA upstream 75812 44094384 ~ 44094911 (-) True G1814207
TU2075488 lncRNA upstream 96759 44115331 ~ 44115614 (-) True G1814210
TU2075512 lncRNA upstream 138189 44156761 ~ 44191383 (-) True G1814228
XM_036959083.1 mRNA downstream 5238 44007225 ~ 44009175 (-) True LOC118943594
XM_021580023.2 mRNA downstream 58899 43953651 ~ 43955514 (-) True LOC110502166
XM_021580021.2 mRNA downstream 127135 43886281 ~ 43887278 (-) True LOC110502164
XM_036959596.1 mRNA downstream 213659 43799576 ~ 43800754 (-) True LOC118936360
XM_036959081.1 mRNA downstream 245824 43767470 ~ 43768589 (-) True LOC118943593
XM_021579784.2 mRNA upstream 336591 44355163 ~ 44369009 (-) True LOC110501913
XM_036959387.1 mRNA upstream 358010 44376582 ~ 44379967 (-) False LOC110501914
XM_021579785.2 mRNA upstream 358010 44376582 ~ 44379969 (-) False LOC110501914
XM_021579786.2 mRNA upstream 358010 44376582 ~ 44379969 (-) False LOC110501914
XM_036959388.1 mRNA upstream 358010 44376582 ~ 44387701 (-) True LOC110501914
TU2073410 other downstream 1336653 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 1409393 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 1625140 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 2409182 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 2548766 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 491835 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 654875 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 1820178 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 3206979 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 3382550 47401122 ~ 47402047 (-) True G1816929

Expression Profile