RNA id: XM_036959394.1


Basic Information

Item Value
RNA id XM_036959394.1
length 7060
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110502171
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44473683 ~ 44553607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCCTCCAAAACTCATCCTTGCTGCAGGGAGGAGCAGTGAGCATCCGTCTCACTGTATTCAAGAAAACGGATATATACAGTActttttcttcttttttaaaACTTTTCATTGCTTATGTTCAAAACCTTTTATATCATCTATTATATGCACAAGGGGTTTCAACGCGGAACCTTCTAGCTATCATCTGTCTTGAAGAAGGGCGCGGGTTTTTCAGTTGAATAGGGAAGTCGTCTCATTTTATTTCCTGCGCCAAAAAAATGCAATGACATGGTCAGTACAATAAAACCTCGATGAGAGGAGCGCGAGCCGGTGGGAAGTGTGCTGCATAACTGCCTGAGATAATGCTGTTGACACGCGCAGCCTGGAGCTGCTGCTGAGGGAGGAACAGACAGTCCTGTACAGTCAGGGAGCTACTCACAGAGAGGAACCAtgtcccaccaccaccacaggaacAGCCAGGGCAGCCACCGCACAATGAGCGCCGAGGAGAGGAGCTCCACGCCCATCCGCCACCACAAGACACCTACACACAAGAGcgcctcgtcctcctcctcatcccagcGCGACGGCCGGCAGGAGGCAGACAGCTGGGAAATCATTGAGGGGCTGAAAATCGGTCAGAGCAACGTCCAGAGGCCAGATAAACACGAGGGCTTCATGCTGAAGAAGCGAAAATGGCCACTGAAAGGCTGGCACAAGCGTTTTTTTGTCCTGGACAATGGGATGCTGAAGTACTCCAAGTCACCAATTGATATTCAGAAAGGCAAGCTGCATGGCTGCATTGATGTGGGTCTCTCTGTCATGTCCATCAAGAAGAGAGCCCGTCGCATTGACTTGGACACAGAGGAGCATCTCTACCACCTCAAGATCAAGTCTCCAGACATCTTTGACTCCTGGGTGGTCAAGCTGCGCTACCACCGTCTCTACCGGCAGAATGAGATCGTCCGCTCCCCCCGAGACGCCACCATGAGGACGTTTCCTCCCCCTGCCAGCACCGAGTCCCCCATCCCTCACCCCCACCCAGCCCCCTCCCCCGCTGCAGGACAACATGAAGTAAAGCAGACCAAGCCCACCAGCCTTCCACCATGGCAGTCCCCCCCGGCCCCCAGGAGCAGAACCAGTCCCCCAACATGGCAGTCCCCCCCTGCCCCCAGTAGCAGCACCAGCCTCCCACCATGGCAGTCCCCCCCAGCCCCCAGTAGCAGCACCAGTCTTCCACCATGGCAGTCCCCCCCAGCCCCCAGTAGCAGCACCAGTCTTCCACCATGGCAGTCCCCCCAGGCCCCCAGTACCAGGAGCAGCTTGCCTGCCTCCTACAGTAACGGGCAGAGCAAGGTGGCCGCATGGCTCCAGGAGTCAGAGGAGATGGACAAGTGTACAGAGGAGCTCGCCCGCTGCCAGTCCAGCCTGATTGAGCTGAGCAAGTTACTGCAGAGCCTGGAGGGCCTACAGAGGACCCAGTCAGCGCCCAATTTCACTGACatgcaggtcccctctctccctgtgagtGCCAGTATGTCGCCCACgcgcctccactcctccaaccccAACCTGTGCGCTGAGCAGGTGGACTTCCAGACCCCTGTCTCTCGCCAGATTCCTGACAACATGGAGTGTGGCGGTGACTACATCAAACTACAGGAGGACTTCTGCCTCATCGCCCAGAaagTCCACTCCATGTTGAAGTCTGCGTTCAACACagtggccatggagaaggagaagatCAAATCTGTTCTCTCAGACCAGGAGCAGTCAGAGCGGTCTGCCCAGGTCATCACCCTCAGGAAGTCTCTGTCACAGGCCCTGTCCCAAAACGCTGAGCTTAAAACCCGACTGGGCCGCATCCACTCTGAGTCGGTCCTGTCTGAACAAACAATCAGTGTGAACCTCATCACCAGTCCTGATGAGgagggggagcagaggggaaTCCCTCTGACTCAACAGACGTCCAATGAGAGCAGGCTGTCGATGTCAGAGTCTGTGTCGGAGTTCTTCGACGCCCAGGAAGTGCTGCTGTCGGCCAGCTCGTCAGAGAACgagGCCTCAGACGATGAATCATACGTCAGCGATGTGAGTGATAACATTTCAGAAGACAATGCCAGCGTGACTGATAACGTCTCCAGACAAATGCCCAACGGAGACCTGGCTGGAAGTGCCTTCCGTAATGGGCGTCGCCCGTGTCTCCCCGCCCCCTCGCCAGACTGCAGCAACATCAACCTGTGGAACATCCTGAGGAACAACATAGGGAAGGACCTGTCCAAGGTGTCCATGCCTGTGGAGCTCAACGAGCCCCTCAACACCCTGCAGCACATGTGTGAAGAGCTGGAGTACACTGAGCTACTAGACAGGGCTGCCGATACGGAGGACCCTTATGAACGCATGGCCATTATGGCAGCGTTCGTCATCTCAGGATACTCCTCCACGTACTACAGAGCGGGAAGCAAGCCATTCAACCCTTTACTGGGAGAGACGTATGAATGTATCCGTGAGGACAAGGGCATGTGTTTTATCGCTGAGCAGGTGAGCCACCATCCACCCATATCAGCTTGTCACGCTGATTCCAACAAGTTCACCTTCTTGCAAGACGTCAGATGGAAAAACAAATTCTGGGGGAAATCAATGGAAATCCTCCCAATTGGCACCGTTAATGTTATCCTTCCAAGCTTTGGGGACCACTATGAATGGAACAAGGTCACCACCTGCGTGCACAACATCCTAAGCGGGAGAAGGTGGATCGAACACTACGGAGAGATCACCGTTAGAAACACCAAAAGCAGCGCCTGTATCTGCAAACTTACCTTCGTCAAGGGAAATTACTGGAGTTCTAATGTGAATGAGGTTCAAGGGTTTGTGATGGACCAAGAGGGGAAGGTGGTGCGTCGGCTGTTCGGAAAATGGCACGAGGGCCTTTACTGTGGAGTCCCGCCCTCTGCCAGATGCATCTGGAGGCCAGGCTCCATGCCCACAGACTACGAGCTGTATTATGGCTTTACCAGGTTTGCCATTGAGCTCAATGAGCTTTGCCCTGAGATGCAAGACCTGCTACCACCCACAGATGCCCGCTTCAGACCCGATCAGAGACACCTGGAGGAGGGGAATGTGGAAATGGCAGCCTCAGAAAAGCAGCGTATTGAGGACATGCAGCGCACCAGGAGGAAGTGGCAAGACGAGAACGACATTAAGCATGAACCACGCTTCTTCAAGAAAGTGGTTGATGCCAATCAAAGGGAGCGCTGGGTCACTAACAACACCTACTGGGAGCTTCGCAAATCCCCCGGCTTCATCAACATGGAAAACCCTAATCTATGGTAGCATATGGATCGCTATGCACACCATATCATCATCGCTGACAAAGGCTTTTATCTATGCACAATGAGGTTTTCAAATGAATATCTCATTGACAAAATAACAGTGTGGAAGGATACAAGAGCTGAGATGAGTTGATGACTTACCATCGCCCTATTCAGCTGGCCAGTCACCCATTCAAGCATCCTCTTGGATCCCCCTCATTGAGCTTGGTGCGGAGGCTGGGTTGTCAGGGCAACAATCTTACCATGTAGATCTATCCTAAGTCGTTTTGTGTTTGTCCTTGCCTTAATGTCATCTATCCACACCACACATTTTAAAGCTTTTAGTGAAACCCACTTGAGTTCTGATAGCGGTTTGATTTAGACTAGTGTTTGTTCTGAAAGCGGTTTGATTTAGACTAGTGTTTGGATTAGGCCTTTGACCTACTACTAATGTATGTGTCATGCATGTTTTAGAGTTCAGCTTTCATTGGCATATCCTATATAGACTAACATTATTTGTtttaaaaacaaaaagaaaataaAGAAGTCTGAAGTTTTTGTAAAATATCTTCAACATCATAGAATTGAGTGAAAATTTAACTAATATACAATATTGGAAGATTGCtcttatttcttttttttttaattagccATTTGCATTAGTTCAGTCTGAATCATAGCTGTATTCTTTATTGGGTCACACATTCTTTGTGAAAGTTAGAGATTCTCCGGTAGTTTTGTATagtttttagccagtagttctgaaagtagcactcaCGAGCCAAAAAAAATAGGAAAATTGTGTACTACATCACGTATGTGCAGATTTGTGCACCACATCattgctctgtctccctctctctctctctgctgtgtgtgcatgaTGTGCCTCTTgttagctgtcactcaaatggttGAAGCTCATTGGTTGAACTCAAATTTCTAGGGGGCTGGACCACGTGGTGGAAAATGGTGCAGCTCAGCTTCCAGAAAAACAGtcactttcaaactagggattgtGTGTGTCTAATTGAGGTAAAAACCATAATTCTGCATGTATGAACTATACATTAGCCCCGTTTATACCTGCCACTTACGTGCGTCCTTCATCCTGATCTTGCCAGTATACAATTGTAAGGTCTGATCAAACTCAGTTCACAATGTGTCTTTTATATTGatctacacctgtctaaaaatgtggCACAATCAGAATGAGGACAAGAACAGGACAAAGGGCGCATGTTATTGACAGGTATAAACGTGGCTATTGACACATCTAGCCCAAAGCGagaggtttaaaaaaatgtaaaaaaatatatttttaaaaaacgtATTAGTCGCCAAAGTTCCGGAACACGTCTTTAATTTGTTTTAATCACTGGTATTGGTGAAGGTCATTGCTGTGTGCCGAGACGTTTTCTCAGCAACTCCCAAAGACAAAACCCCTTGAGTTGAGACGTTTATAGTTCCAGTTTGGCTAGTTGAGGGAGACTGGCCCAACAGCTGATACATAAGCACTGGAAAGTGCCTCCCTTTTTCGAAGCACACCCCCCTCGTCACTCATCACAACGGTTTAAGCTACAGACAATACTTCCTTGTAACTAACTTTTACATGTATAGACAATTCTGCTTTCTGTTATTCAGCTCACACGAAAACTATTTTTGATAGTTTAAGAAAGGAAAAAAAAGGTATGAATATAATTTGAATGTTCTTTAATTTCCTGTAATACAATtgatctgtgttgttgtctgagtgtTATAGTGAGAATCCTAGCCTGCAGTAGAACTATAAAGACATGCCAGCATCCAAGACATCTGATATGGTGATATGACGACATACCTACTGGCCGTGTGCCCATCCCTTCTAAAGAATCTATTTAAACCCGGGTCACTTGTCTGGATACATGGTTACACCGACTCATCTTTGATACAGGTCTATGTATAATGTGGTAGCTGGTTGGCTAGTTAGTGTATTTCCCTTTCACGTTATTTTTCCAACTAAGCCCCTCAGTGAAATGACAAGCGTAGTGAAAGTGGAGTAGTAGTCCTGCTGTCCTGTAGCAGTATAGAGGTCAACGCGTCCTCTACTGGGAACCACGTGACCTCTACTGGGAAGCACATGACCTCTACTGGGAACCACATGACCTCTACTGGGAAGCACGTGACCTCTACTGGGAAGCACGTGACCTCTACTGGGAAGCACGTGACCTCCACTGGGAACCACGTGACCTCTAATGGGAACCACGTGACCTCTAATGGGAACACCGTGACCTCTAATGGGAAGCACGTGACCTCTACTGGGAAGCACGTGACCTCTACTGGGAACCACGTGACCCCTACTGGGATCCACATGATCATTGGAGAGTCACAACTAcaccagactgactgactagatacccccACTTATACAACTACAGTAcaccagactgactgactagatacccccACTTATACAACTACAGTACACCAGACTGACTAGATACCCCCACTTATACAACTACAGTACACCAggctgactgactagataccccacTTATACAACTAcaccagactgactgactagatacccccACTTATACAACTAcaccagactgactgactagatacccccACTTATACAACTACAGTAcaccagactgactgactagatacccccACTTATACAACTACACCAggctgactgactagatacccccACGTATACAACTACAGTACACCAggctgactgactagatacccccACTTATACAACTACACCAggctgactgactagatacccccACGTATACAACTACAGTACACCAggctgactgactagatacccccACTTATACAACTACAGTAcaccagactgactgactagatacccccACTTATACAACTACACCAGGCTGACTGACTAGATAGCCCCACTTATACAACTACAGTACACCAGGctgactgactagatatccccacATACAAGTGTATTGTAAAACACAAGGGATGCCTATTTGCCAGTTCTTTGACTATACATAACAGATTCCCATAGACATATTAATTTGTGTTATGTAAAAGAGGCCAAGGGACAAAATTATTTTACAACGTTCAGAATTATTTTGCTTTTGCAAATCCTTTAACGTGGCAGAATGTTGATGTTAAAGCCAAagacaaatgtttttttaattataGAAAAAATATCAACTCATTCTAGTTATGGTGTTTTCATTATGTAGTTAACCACACAGAGAAAAAGCTATTATATTTGATTATCCTTTAAACAAGTGTCCAGTTCCTAGAATTTACTGCTATGATGTTGTCCTTAACCATTCACCAATACAATTTTAAAAGGTTTAGATTATTACTGCCAAACAGCTTTAGTGTATATTTGACGTCCCCCCTTCCCTCTTGTCATTGTGTGTCGCAGTCCATTCACAATGGTTCAGTGTGTTAGATTACCACAGAATCTGTAACGATACATTATACATTTGGATTATATTGATTTGTTCTTTGTTTTTGTTCTAGTGAAGCCGGAAATTGAAACGAGGAAAGTGATCCTACGTTAGAAATATATAGACTGGAAACGTTCAACTATAAAGTCTTAACTATTATTTTCGTGTGTAATGTCCAGTACTGAAGATTAAGACAGAAAAACAATTAAGATATGACTACAAACGTCATATCGTAGCCATGTATTCAGAAATCGAATTTGTTTGTCCGCTGTCACTTCCATTTGATGTGCCTTAATACATTTGATTAACGCCTCGCACACAATGTTGATAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075715 lncRNA downstream 30956 44443162 ~ 44443762 (-) True G1814384
TU2075703 lncRNA downstream 33162 44436030 ~ 44441556 (-) False G1814375
TU2075704 lncRNA downstream 33162 44436030 ~ 44441556 (-) True G1814375
TU2075708 lncRNA downstream 43121 44430612 ~ 44431597 (-) True G1814379
TU2075706 lncRNA downstream 44200 44429066 ~ 44430518 (-) True G1814377
TU2075659 lncRNA upstream 19242 44572849 ~ 44573918 (-) True G1814349
TU2075804 lncRNA upstream 48325 44601932 ~ 44605341 (-) True G1814459
TU2075768 lncRNA upstream 107504 44661111 ~ 44662572 (-) False LOC110501923
TU2075769 lncRNA upstream 107504 44661111 ~ 44662572 (-) True LOC110501923
TU2075827 lncRNA upstream 122697 44676304 ~ 44676524 (-) True G1814482
XM_036959388.1 mRNA downstream 87017 44376582 ~ 44387701 (-) True LOC110501914
XM_021579785.2 mRNA downstream 94749 44376582 ~ 44379969 (-) False LOC110501914
XM_021579786.2 mRNA downstream 94749 44376582 ~ 44379969 (-) False LOC110501914
XM_036959387.1 mRNA downstream 94751 44376582 ~ 44379967 (-) False LOC110501914
XM_021579784.2 mRNA downstream 105709 44355163 ~ 44369009 (-) True LOC110501913
XM_021579791.2 mRNA upstream 4524 44558131 ~ 44562475 (-) True rbm45
XM_036959398.1 mRNA upstream 44747 44598354 ~ 44632182 (-) False LOC110501919
XM_036959399.1 mRNA upstream 44747 44598354 ~ 44632188 (-) False LOC110501919
XM_036959400.1 mRNA upstream 44747 44598354 ~ 44632193 (-) True LOC110501919
XR_002470302.2 mRNA upstream 81277 44634884 ~ 44636332 (-) True LOC110502136
TU2073410 other downstream 1796958 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 1869698 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2085445 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 2869487 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 3009071 41447899 ~ 41465647 (-) True LOC110501886
TU2075825 other upstream 119840 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 1285143 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2671944 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2847515 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2917687 47471294 ~ 47473384 (-) True G1817287

Expression Profile