RNA id: XM_021579800.2


Basic Information

Item Value
RNA id XM_021579800.2
length 2636
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110501924
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44917479 ~ 44939556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACCACGTGATTGTCTAAATAATTCATGCAGCACGTCCCCTAGAAACACGGCGTCGTCATTAATCGCGAGGACTCTATCAGACTTGAAAACTGAAAAGATCCCAAGAAAATAATATCCAAACGCTCCGATACTCAACGCATCTGAAGCCAGCACTTTAACACAGCATCTGAACCAATGGAAGCTTGGTCATGGTGGATGGAATGATGAGCACGTGAAGAAAAACACAACACTGATCTGCATAAAATACGGTGAAAGAATACTGAGGCGGTGGGAAACTCCAATCACGTGATATAAGAACGCCCATACCATTGGATAGGGCTGCATTGGCCTTCTTGTTTTGAATCCTCACAATGCAGAAAGCTACTTTCTACGATAATTCTGGAGTCTTTGGAAGCTACTCTTACCCCAAATCCGAGTCATATAGTTATGGCCCCAGTCACCAGCCATACTCCACTTCTAACCTTGAGAGTGATTATCAGGGTCCAGTTTGTCCAATACAAACCCCAACTGTACGGCCACCAACTCACAAAGACAATACCATGAATGGAAACTGCACGAGATCCAGTAGCAGCCAAGGAAACAGCCAACTGCCGAGTATTCGTGAACAGCCGCAAGCGCCTCCATTGTCGGCCTCTTCGCCTAACTCCAGCAACACTTCATCCCAGAAGAAGAAATCTCCCTCAAACAATGATTCTAATACTGCCACCCCAGTCACTAACAAACAAATATTCCCATGGATGAAGGAGACGCGATCGAACGCCAAACTGAAaagcaacagcagcaacaacaattGCTCAACCGCAgaagGTGAGTCCTGCGATGAAAAAAGCCCACCTGGTCCAGCCTCTAAACGGGTTCGAACTGCTTACACCAGTGCACAACTTGTAGAACTTGAGAAGGAGTTCCATTTCAACCGGTACCTGTGTCGTCCCCGAAGAGTGGAGATGGCTAATTTATTGAATCTCACTGAGCGCCAAATAAAGATCTGGTTTCAAAACAGAAGGATGAAGTACAAAAAGGATCAGAAGGCTAAGGGGATAATGCACTCTCCCATCGGACACTCCCCGGACAGAAGCCCACCATTAAGTGGCCCAAATCACATCGGATATTCTGTCAACGTAAACTGTCTCAGCTATGACGCACCGTCGCCCCCTTCATTCGCCAAACCCCAGCAAAACATGTACGGCTTGGCAGCTTACACGGCACCATTAGGTGGCTGTATACCGCAACAGAAAAGGTATCCGGGCTCCGAATACGAGCACCACAGCATGCAAGGCAATGGTGGCTTTGCCAACGCTAATTTGCAAGGCAGTCCGGTGTACGTTGGGGGAAATTTCGTTGATTCCATGCCAGCCTCGGGTCCCATGTTCAACCTCGGCCATTTACCCCATCCCTCATCCGCCAGCGTGGACTACAGTTGTGCCGCTCAGATTCCAGGCAACCACCACCATGGACCCTGTGATCCCCATCCCACATATACAGACCTCAGCTCTCACCATGCGTCTCAGGGAAGGATTCAGGAAGCGCCTAAACTAACGCATTTGTAAAATTTGAGGATTTTGTCTGTGCCCAAATTCTGTTAGGCTCTTTTATTATCTCAGTAGTCAAGTCATTTATATGATTACACTAAAAGTGAGCCATGTATTACCAGTGTTATTATCGATATTACTATTAATGCTATTGTGTAATATTTTCTTTCTAAGAATATGTCTGGGCCATTTTTCTTGACTGTTGAGGATGCGCAGGAGAGACCGTTTGTCTGTTGAGGATGCGCAGGAGAGACCTTTGGCTGTTGAGGATGCGCAGGAGAGACCGTTTGTCTGTTGAGGATGCGCAGGAGAGACCGTTTGTCTGTTGAGGATGCGCAGGAGAGACCGTTTGTCTGTTGAGGATGCGCAGGAGAGACCGTTTGTCTGTTGAGGATGCGCAGGAGAGACCGTTTGTCTGTCGTTCGTTTTCTGAAGTGCAATGCGCAGTATTGGGGACGGAAAACGTCATTAACATTACTTGAAGGTAAGTCCTGTAGATCTGACAGTAGTTACCCATCTTTATAGGGATGGGTTtttataaaaatgaaaaaaaaagctCTAAGGTCTCTGTTTGCTATATTTGAAGCGTCTTATTTATTTTTCCAAGATTGTATTGCATTTATCTAATTTTCTGTATGTATTATTTAAGTTTTTTGTATTACACATTATTTATAATGTACATGTATGACTATTTATATGGACATCTAGAATTTATGCAACATCGTTGGACAGACTTTGACATCATGGCCCTTCAATAGGTACACGGGTTTTTGGTGAATGCTTGTTTTAAATTATGCCTTCAGAGGCTGGTGGTCTTAGGTTGTTGTAGAAGGAACTCCTACGTGTAAATCTGGGAATATTGGGGAATTTTTTACGTGTCTCTATGAAAAACAAAGTTAGGCTACATGTAGCCCTATCAAAATACCGAATATGACAGAAATGTATCACACTAGTATGTCATTTGTTGTCATTGCCAATTTTCATATCAGGTCATTGTCATTTCATCAGTTGGACTGTCCATGCATACATTTATGAAACGCTAATGATATGAAATTGTTATATTTTAAAGTGTTTAACATTTTGTAAATAAAGTGCTTAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076580 lncRNA downstream 1865 44915336 ~ 44915614 (-) True G1815143
TU2076025 lncRNA downstream 19104 44897801 ~ 44898375 (-) True G1814669
TU2076021 lncRNA downstream 21837 44895408 ~ 44895642 (-) True G1814665
TU2076008 lncRNA downstream 32456 44884815 ~ 44885023 (-) True G1814653
TU2076007 lncRNA downstream 32830 44884355 ~ 44884649 (-) True G1814652
TU2076595 lncRNA upstream 33478 44961547 ~ 44962604 (-) True LOC110501930
TU2076622 lncRNA upstream 65908 44993977 ~ 44994624 (-) True G1815184
TU2076635 lncRNA upstream 93229 45021298 ~ 45040004 (-) True G1815196
TU2076637 lncRNA upstream 95455 45023524 ~ 45024465 (-) True G1815198
TU2076657 lncRNA upstream 115260 45043329 ~ 45043619 (-) True G1815218
XM_036959404.1 mRNA downstream 252616 44659569 ~ 44664863 (-) False LOC110501923
XM_021579797.2 mRNA downstream 252616 44659908 ~ 44664863 (-) False LOC110501923
XM_036959403.1 mRNA downstream 252616 44659908 ~ 44664863 (-) False LOC110501923
XM_021579796.2 mRNA downstream 252616 44661070 ~ 44664863 (-) False LOC110501923
XR_002470302.2 mRNA downstream 281147 44634884 ~ 44636332 (-) True LOC110502136
XM_021579803.2 mRNA upstream 467 44928536 ~ 44933201 (-) True LOC110501925
XM_021579805.2 mRNA upstream 15143 44943212 ~ 44945287 (-) True LOC110501927
XM_021579804.2 mRNA upstream 19593 44947662 ~ 44950370 (-) True LOC110501926
XM_036959406.1 mRNA upstream 26231 44954300 ~ 44956065 (-) True LOC110501928
XM_021579806.2 mRNA upstream 31688 44959757 ~ 44962879 (-) False LOC110501930
TU2075825 other downstream 243591 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 364059 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2239719 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2312459 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2528206 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 910681 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2297482 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2473053 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2543225 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 3133980 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile