RNA id: XM_021579803.2


Basic Information

Item Value
RNA id XM_021579803.2
length 4249
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC110501925
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44928536 ~ 44933201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCGAATTACTTATCTACTTTTACAGATGTTTTGAATCATTCTTCATAACAATTTACAAATCTGGATGGATGGAAAGCTCTTCGTTTAATTGCTGCATTGTGTCATTTTAGGGTGATTTAAAatgatatattatattgtattaccATTGTGTGCGAGTACATGTTTTTAGTAATATGCACTTACAGTGTCACGTGTCATTTAAttggttgatttgatttgataatataaGAAACCTTTGCAGGTGTAGCTTTTTGGCCAGTACACCTATCACCAAAGCCAAACAATCCTTCTCATTTTGATAGTGAACATATTAAAAAAGCTATCATACCAGACTGAAATCTAAACAATTTCGAACATGGCTTACTTTTTTAACATTTACATTTCAATCATTTAATTATTGATTGTTTGGCATCGGTTCGTTGCCACGAGGCTCTTTCAGGAGTTATGAAAGGGATAGGGTAGATGAAATGATGAGATTCTTGTAACTTTTGGATGACCCTTTCTTGACAAAGACAGTCCCCATCAATTGTCCCCAGGCTTTATCCCCCCTCTTTTTGAGCCCGGGAGACGTTTTgtatcttttgtttgtttatctgtcAGACTCACTGGCTTTAGTTTGATTTAGTATTGTAGAAGTTGAAGCATGTTAACCATAGTATTGCACAAAACCATCTAAATGTCCGTATATACACAGACGTTGTATTTATTCCATTCAGATTGTTTCCCATTGACGGTTAGATGATCATGATTGATATTTAGATATTGACATTAACTATTTAAAATGTTACATATAACATCTTATTTTTCAATACAGGGCTCACATTGTCAATCCTTCATTGAAATTGGTTAAATATTTGGTTTTATTCAACATAATTTAGATGTTTTGGAGTTAGTGGAAATTGCTGCTATTGGTGTTTATATGTAGGCCCTACCCGTTAATGAAATAGCTTTACCTCCATTGGCCCTATCTGGTCACATGGTTCTCTAACTTTATTCAGTTGACAGCAAATAGGAGGGCTTTATGGTGGTGGAAAAAAGACAACTCGAGAAAACATTGTAATTTCTACCTTCATAAATTAATGGCCATGAGTTCGTATATGCTGAACTCTAAGTATGTGGACCCACAATTTCCCCCTTGTGAGGAATATACGCAAAATAGCTATCTACATGAGCAGGGAAGAGGCTACTACCGTCCATCGCAGGACCCAGATTTGCAGCATCCAGGAATCTATCCACGGTCAAACTACCCCGAGCAGCCCTTCAGTTGTACCACTGTGCATGGTCCTACAGTAGAGCTACGGGGTCATGTGCAGGGGCGAGACAGTCACCCTAGCACTTTTACCGCACAGACCGAACCGTGCACCCCGGTCCAAGTGACTGGACCCCGGACTTGTGGTCAGCAACAAAACACAAAGAATCAAAACGGGATACAAGCCAAGCAGCCTGCAGTAGTTTACCCCTGGATGAAGAAAGTCCACGTAACTACGGTAAACCCGGATTACACAGGACCTGAACCCAAACGGTCTCGGACAGCTTATACAAGACAGCAGGTTTTGGAACTGGAAAAAGAATTTCATTTTAACAGGTATCTGACCAGGCGGCGTCGCATAGAGATTGCCCATATACTCGTTCTCTCCGAGCGTCAGATCAAAATCTGGTTTCAAAACAGAAGAATGAAATGGAAAAAAGACCACAAACTACCGAACACAAAGGGAAGAGCTGCTTCTGCTTCCGGCCAACAGTTACCAAGTATCCAGAAGGATAACCAGACTGATGAAACAACTTTCTAAGATGTGAAAACTTTGACCGTTCAATGAATTGTATATCACATACTATATTATACAATTGACTTTGCATGGTCTCAAAACATGACATTTTGGTCATTGTGATTTAACGTACAATAGTTATATAATGTCAGTTACAGTCAGAAGGACCCTCGTTGTGTTGGCTCATTGAATTGAGTCAATTTCCAACATTGTAACTGAACTGAGAAGCGTTTCATCACTACATGCTTATTAACATGCTTCGAAGAGGTATTGCAGATCGAAATACATTTTGTTAGAGATGTTTTCTGATTATACTCTTCTCGCTGATTCTATAACGTCACTCTTCCCACGTGCACCACAAAAGTCAGAGTAAGGCATGaacatgtatatatttatttttaaaaaaaattaaaaatacgtAAAATGATGTGAAGCTTTTGTACACACCTTAATTAGAAATTGTGTTGTGATGAAATCGAACTATTaagacaaataatatttgattcaTATGATTgctaaaaaaaagaaaaggtaATTGCTGCATCAGTTGATCTATACATTATTTTCAGACAAGTGACAATATTTGTTACTTTAATATAGGCTAGCTTAAAGAAACTATTGAACTCGTATTTATGTGCGCTAACTGGTTGAATTTTTTTgtttaacgttttttttttaaaacttgtaTACAATAAAGCTTTTAAAATGGCGTTAAATTCTATTGAGAAACAAGACATTCCAGTGTGCAGACTCTTCCCAGGGCCCGTATTCAGTTCTAAATCTCTCTGGACATCTTTGTAAACAGTGTACATTTAAAGCGGGTCTCACACATGGCATCTGAAACTCTATCATGACTTTGTCTTGTTCTTTGCATCGAATGTATATTTATTTAGATGCTTCACTATTTTCTATTTTGATCAAAATCGAACAGAACATTATTAATAGTATATATTCAATGTTAAGCACGTAGAGGGACATAAATACGTGTAACAACCGATGTTTTCCCTTATTCTTATTCAACGACAATTTGTAATATAGAGTGTTTACATTtctttatgattatttatttaattaaatatttgtACATTTCCTTATTAAAACCCACAACAGTTCCAAACATATTTGAGCAACGAACGTTTTATTGTATGCAATCTGCTTACAACTGTTATGGATTATTAGCAATTATCTCACGTTTTCTTATgcagtattacatttttttttactctggCATTGATTTAAACCAAACCTAGCCACACGGGCATTCATGTCATGTCTCAAGACAGATATTCTTATTGTTCCTATCATTGTCCTCGTGACAAAAAGCGAAGACGGCTTGCATTGCGAAGACGTCTTCCCTCTGAAGAGTCTTCACGACGAGAAGTTGAAAAGGTATTTCAACTGAAGTTCGACAAAAGCTCCAGAGGCAGGTTCACCCAGAGGACAGTGCTTCTATAGCCTTAGACACATTTCAGCCGCGAGGAGTGACCTCTGAACCCTTAACCCGTTGGACCTATAGTCTACTTCTCTCACTGGCGCTATTCGCATGGAGTTTTTCATTAGATACATGTTGTACTTTTAGTATTAGAATATGGAACGCTTATATAACCTGGTTAAACATGCCACGTTGTAAAGCCTATATTTATTCTGCCAGATTGGTTGGTTGCATGTCACGCTGTGTTAATATGCAATCCTGGCTGACCTTTTTtgtgtatcggcttttttttgttgtctgtatatACATGCGAAACTTTTTAATGGGAAAATAGAGATTGTTCCATGATATGCATTGTGGTGGCACAGAGCACTCACATTTGTCAATATATTTCTGTATCAAGTATTCTGAGGTTCATGCTTTACAAAAATGTTTGTCATAGCCATCAATGCTTGATTTACACAAAGGTTGACACATCTCACAGATTGAGCTATTTATTTTTACCCTTATTGTGCTTGTttgagataaaaaaatatatatgtggcATTGTTGGATGACAATGTGACTAAGTTCAGTTTTATAGCAAGAATCATCAAATGTCCCCTTAACCACACCAATGTTAGTCAGTGCCATAGATTTCGGGAATTTGAATGTGGTCCTATCCAAACCAGTCAAGGAACTGTTAGCAAAATCGTAGGCTCAGTGTGATTATATTTGTGACCATGCTTGGATTAAAACCTGTATAACTTGAATGCCTGtctgcttctctctgtgtgtgtttctgtgtgtgtgttttgtttctttgtgtgtgtgtgtgcgtgtgtttgtgtgtgtgcgtgtgtttgtgtgagtgcatgtgtctTCACATTTGCGCCCGCTCCTTTATAAGCTTCGTGTCACTCTCATCAGGCCTTTACACTGATACCTATTCATCTTCCGTTTTCCACTACATAGATGTCAGTGTACAAGCAATGTGCGCATGTCATAGCAAATGAAAGAAAACTGTACCAAATGATGCAATAATAAATAACAGTTCTACATGCAAACCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076580 lncRNA downstream 12922 44915336 ~ 44915614 (-) True G1815143
TU2076025 lncRNA downstream 30161 44897801 ~ 44898375 (-) True G1814669
TU2076021 lncRNA downstream 32894 44895408 ~ 44895642 (-) True G1814665
TU2076008 lncRNA downstream 43513 44884815 ~ 44885023 (-) True G1814653
TU2076007 lncRNA downstream 43887 44884355 ~ 44884649 (-) True G1814652
TU2076595 lncRNA upstream 28346 44961547 ~ 44962604 (-) True LOC110501930
TU2076622 lncRNA upstream 60776 44993977 ~ 44994624 (-) True G1815184
TU2076635 lncRNA upstream 88097 45021298 ~ 45040004 (-) True G1815196
TU2076637 lncRNA upstream 90323 45023524 ~ 45024465 (-) True G1815198
TU2076657 lncRNA upstream 110128 45043329 ~ 45043619 (-) True G1815218
XM_036959405.1 mRNA downstream 466 44917479 ~ 44928070 (-) False LOC110501924
XM_021579800.2 mRNA downstream 467 44917479 ~ 44928069 (-) False LOC110501924
XM_021579802.2 mRNA downstream 2104 44917479 ~ 44926432 (-) False LOC110501924
XM_036959404.1 mRNA downstream 263673 44659569 ~ 44664863 (-) False LOC110501923
XM_021579797.2 mRNA downstream 263673 44659908 ~ 44664863 (-) False LOC110501923
XM_021579805.2 mRNA upstream 10011 44943212 ~ 44945287 (-) True LOC110501927
XM_021579804.2 mRNA upstream 14461 44947662 ~ 44950370 (-) True LOC110501926
XM_036959406.1 mRNA upstream 21099 44954300 ~ 44956065 (-) True LOC110501928
XM_021579806.2 mRNA upstream 26556 44959757 ~ 44962879 (-) False LOC110501930
LOC118943612 mRNA upstream 32435 44965636 ~ 44967134 (-) True LOC118943612
TU2075825 other downstream 254648 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 375116 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2250776 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2323516 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2539263 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 905549 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2292350 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2467921 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2538093 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 3128848 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile