RNA id: XM_036959415.1


Basic Information

Item Value
RNA id XM_036959415.1
length 1324
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC110502174
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45343530 ~ 45365813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGGCAGAGCTCAGAGTTTGTCAGACGGCGGACCTGACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTTTACTTTTTATTACAAATGGAGAAACATGAAGATGTTCAATACTGTTTTCAGGACAGAAACTCTTCTTGCAGAAAGGCTTCGCTATCGACATATATCTACATAACACTGTACGTCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGACTGATTGTGATACCAGTAATGACTGTAGCAATAATGGAATCATGCTGGGGTTTTGGGGAATATTTATGTGTGTTTCAGATCTACATTGGTTGCTTATGTTTTTCTTTATCTCTGGGCAATTTAGTCCTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatCATGTGTTGTATATCCATCACCTGGTGTTGTTGTATCATATACCGTGCTGCTAATATTAATTACTTTGTAAATGTACAGGTACCAAGTTGGTGTTTGAAAGAATGTACTACTGTTGAAGGGTCAATCTGGGTTAATTTCACTGATCTTGTTATTACAATGGTTGTCCCGTGCTCTGTTATTATAACACTTTATGTGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGTCAGTGTGTCTGGTGTTAAACCTGTACAGGCAAGTAAGTCTGAGACAAAAGCAGCAAAAACTCTAGCTATTGTTGTTTTCAACTATCTAATTTGTTGGATTCCATCtctatttattttcttttttttttcttttttaagtGATTATTTATTAGCATATTTCATCCATTTTCTGGGACTTGTTAATTCCTTAATTAATCCAATCATTTATGCTTTCCTTTATCCATGGTTTAAAGTGACAGCTAAACTTATTTTAACTTTAAAGATAAGACGTGCATAGTTCCTATAATAAGATTCCCTAGTTCGACAAACATCGGTTTGATATGGTTTTGTTCTACAATTGTTGTAATTATTTCATGTAACAACACACCGACATTTCTTATCTCAGTGTTGTCATGATAGATACATGTGGTGTTGATACAGAATGATTTGTCTGGATTGGAATGGAATGACTTGGAGAAGGCATAAGAAGGAATAAGCTTGGTTTATAAAAGACATTGTAGTCATTGTGGATTGTGTACTCCAAATACCTAAGTCTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076790 lncRNA downstream 121477 45242797 ~ 45243013 (-) True G1815325
TU2076745 lncRNA downstream 130837 45185687 ~ 45233653 (-) False G1815303
TU2076762 lncRNA downstream 130837 45196457 ~ 45233653 (-) False G1815303
TU2076747 lncRNA downstream 130837 45196925 ~ 45233653 (-) False G1815303
TU2076781 lncRNA downstream 132466 45223160 ~ 45232024 (-) True G1815317
TU2076868 lncRNA upstream 9680 45375493 ~ 45414973 (-) True G1815396
TU2076873 lncRNA upstream 23884 45389697 ~ 45449161 (-) True G1815400
TU2076876 lncRNA upstream 26483 45392296 ~ 45433726 (-) True G1815402
TU2076955 lncRNA upstream 180320 45546133 ~ 45546419 (-) True G1815463
TU2076958 lncRNA upstream 182572 45548385 ~ 45548871 (-) True G1815466
LOC118943612 mRNA downstream 397356 44965636 ~ 44967134 (-) True LOC118943612
XM_021579806.2 mRNA downstream 401611 44959757 ~ 44962879 (-) False LOC110501930
XM_036959406.1 mRNA downstream 408425 44954300 ~ 44956065 (-) True LOC110501928
XM_021579804.2 mRNA downstream 414120 44947662 ~ 44950370 (-) True LOC110501926
XM_021579805.2 mRNA downstream 419203 44943212 ~ 44945287 (-) True LOC110501927
XM_036959084.1 mRNA upstream 54072 45419885 ~ 45432246 (-) True LOC118943595
XM_021579814.2 mRNA upstream 91413 45457226 ~ 45458628 (-) True LOC110501936
XM_036959416.1 mRNA upstream 154034 45519847 ~ 45520832 (-) True LOC118943614
XM_021579813.2 mRNA upstream 167284 45533097 ~ 45543990 (-) True LOC110501935
XM_036959417.1 mRNA upstream 185041 45550854 ~ 45578903 (-) False LOC110501933
TU2075825 other downstream 690602 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 811070 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2686730 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2759470 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2975217 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 472937 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 1859738 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2035309 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2105481 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2696236 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile