RNA id: XM_036959427.1


Basic Information

Item Value
RNA id XM_036959427.1
length 3579
RNA type mRNA
GC content 0.53
exon number 18
gene id ints6
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46119388 ~ 46156972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACAGAGCTCTCAGTGTAGGGAGAAACAGGGATGAGATGTAATAGGAAACTTGGTTTCTATGAAATTTTGTAATATTTacaagaaaataataataataacataaagAATCATCAAAAATCCCTCTTTAAGTTAATAGCCTGCCCATAGGATTTTTAGATTTAGTTCAGGTTATTGAAGGGCATTTACACTCACTATTCTGACACTTTTGTAAAGATGTGTGAggcagttagttagctagctagctagctaaggcgGCAGGAGgagaacaaaatattttttttttcagttttgaCCGGTTGCACTGACACCAAGTCCATGCAGAACGTGTCATCACCAACACAATGCCCGTGTTACTTTTTCTGATAGACACGTCCGCGTCAATGAACCAGCGCACCCATCTGGGCACTACCTATCTGGACATTGCAAAAGGCGCTGTTGAGACTTTCATGAAGCTTAGAGGCAGAGATCCGGCGAGCCGAGGGGACCGGTATATGTTGATAAATTTTGAGGACGTTCCCCTCGGAATCAAGGCTGGATGGAAAGAGAGCCATGCCACATTCATGACAGAGCTGAGGAACCTTCAAGCAGCAGGACTCACAACTATTGGCCAGTCTTTGAGGACCGCTTTTGATTTGCTCAATCTCAATAGATTAGTGTCTGGGATAGACAACTATGGACAGGGCAGGAATCCCTTTTTCCTGGAGCCGTCCATCATAGTGGCCATCACCGACGGCAACAAGCTGACCAGCAGTGGCGGAGTCCAGGATGAGctccacCTTCCCCTGACCACTCCTCTGCCGGGCAGTGAGCTGACCAAGGAGCCGTTCCGCTGGGACCAGCGTTTGTTCTCCCTGGTGCTGAGGATCCCTGGACACGCCACTGTAGAGCCTGAACCACTGGGAGGGGTCCCCCCCGACGACTCGGCCATCACCCCCATGTGCGAGGTCACCGGAGGTCGCTCCTACAGTGTGTTCTCCCAGCGCATGTTGAATCAGTGTCTGGAGTCTCTACTGCAGAAGATCCAGAGTGGAGTGGTCATCAACTTTGAGAAGACGGGCCCGGACCCCCCTCCTGGAGAGGATGAGACCCTGAAGCCCGGCCCCCAGTCGTGGCACTGCTGCCACAAGCTGATCTACGTACGACCCAACCCCAAGACCGGTGTGCCCATCGGACACTGGCCCATTCCTGAAGGCTTCTGGCCCGACACGAACTCCCCCACCCTGccccctCGCTCGGCCCACCCCCACGTGCGTTTCTCCTGTCTGGACTCGGAGCCCATGGTGATTGACAAGGTTCCCTTTGACAAGTACGAGCTGGAGGCTTCACCTCTCACACAGTACATCCTGGAGAGGAAGTCCCCTCATACCTGCTGGCAGGTGTTTGTAAGTAACAGTGCCAAGTACAGTGACCTGGGCCAGCCCTTTGGCTACCTGAAGGCCAGCACGGCTCTCAACTGTGTCAACCTCTTCGTCATGCCCTACAACTACCCTGTTGTACTGCCTCTACTGGATGACTTGATCCGGGTGCACAAGTTCAAGCCCACCATTAAATGGCGTCAGTCATTTGAGAACTACCTGAAGACCATGCCTCTTTATTACATTGGGTCCCTCCGGAAGGCGCTAAGGATCATGGGAGCTCCTAACCTCCTGGCCGACAACATGGAGTATGGTCTGAGTTACAGTGTGGTGTCCTACCTCAAGAAGCTCAGCCAGCAGACCAAGATAGAGTACGAGCGGCTGATAGCATCTGTAGCTAAGAAGGTGGTAGCGGAGGGTGGCATCAAGGTGCGTGACCGCGGTGGGGACATCTCCCTGGCCCAGCGCAGAGACTTCACTCAGCTTCTGGCCAGCATCACAGGAGAGACGGCCGCCCTGCCCCTGGAGCTAAACTCTAAAGAGTTCTCTGGCTTTCAGCTGGCTCCTCTCAACAAGAGTCTGAAACCTCAGGGTTTCCGGAACGCCTACGACATTCCCAGAATGCACCTCCTGGATCAGCTGAGCCGCATGAGGAGGAACCTGCTCAGCACCACCTGTCTGCTCCGAGGACAggacacagACCAGCTGCACAGTGTGCCCATCGCCCAGATGGGGAACTACCAGGACTTCCTCAAAGCCCTTCCCCAACCCCTCAGAGACGCAGACCCTGAACAGCCCAAACGCCTGCACACCTTCGGAAATCCTTTCAAACTGGACAAGAAGGGGATGATGATTGACGAGGCCGATGAGTTTGTGACGGGTCCCCAGAACAAGGGCAAGCGTCCGGGGAGTGACTCCAACATGCACGGGGTCGGGGGTGGGGGTCCTAAGAGACGACGGTGCATGTCCCCTCTACTGCGCCCCGGCAGAGCCTATTCGCCCCCCGTCAGCCCTGCAGCCAGCCCCTTCAGACCCCCCCTCGCCGaGTGCGACCAGAATGAGTCAGACTCAGAGGCTGTTTTTGGAAACCTCTACAACCCAGAGACGTGTGAGACCGGGACAACGGTCCAACCAGGAGAGATCCTCTCTGGACCCCTTCTAGACGGCCCCGGCACAGGGAACCGCATGGAGGCTGATGGGGACACTGAGGAGGAGAACGGACTTCCCAGGGAGGTAGAGCTCTCAGAGGGCagtgaggatggaggagagactgggggTGTGGTGGAGGAGCAGCGCCCGGCCCGGTACCCCTCCCCCGGGGAGCTGAAGAAGGTGATGAACAGCGAGAGTCTGGAGGTCAACACCGAACTACGAACCCTCATCACCAAGGAGATACGGAAACCCGGGAGACaCTATGAAAAAATCTTCTACTTCCTGAAGCAGATCCAAGGAAGCTTTGACACACGGTTGATATTTCTCCAGAACATTATAAAAGAAGCTGCAAGGTTCAAGAAGCGGGTGCTGATAGAACAGCTGGAGAACTTTCTAGAAGATATCCATAACAGAGCCAACAATATGAACCACCTAGACGGGTTCTAATGGACAACTCTTCACTCCCCGGACCCTCTgacctaacccctcctccccaccctcagCCCTCAACCTGCAGCCCTTACCCAGGCTGAAATATTCCTATAGAGAAGGGGCATATACAGTGTATGAACTAACCCAAGCAATGAAATGAGTGCTgttggcctgtctgtctctgtcagtgtaTACTGTGTGACGCGTGTCTCATCAGTGATGGTAGGGTGAACTGATATTGCTAAGGGAGGGGGTTCAAATTAGATTGTAATAAGTTTCCAACAACCTCAGGGCCAAAAGAGAAACACTGATGTTTTAGGTTTCAAATTAATCTTTAGGTGgcttcatgttttttttcttccattttctctttctagtcatctccctctctcgttctagtcatctccctctctcattctagtcatctccctctctcgttctagtcatctccctctctcgttctagTCATCGCCCTCTCTCGTTCTAGTCATCGCCCTCTCTCGTTCTAGTcatcgccctctctctttctagtcatcgccctctctctttctagtcatcgccctctctctttctagtcatcgccctctctctttctagccctctctctttctagtcctctctttctagtcctctctct

Function

GO: NA

KEGG:

id description
K13143 INTS6, DDX26; integrator complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2077515 lncRNA downstream 2310 46089652 ~ 46117078 (-) True G1815931
TU2077470 lncRNA downstream 55056 46034114 ~ 46064332 (-) True G1815902
TU2077481 lncRNA downstream 73490 46044335 ~ 46045898 (-) True G1815909
TU2077467 lncRNA downstream 90461 46028573 ~ 46028927 (-) True G1815899
TU2077329 lncRNA downstream 109714 46009456 ~ 46009674 (-) True G1815781
TU2077547 lncRNA upstream 12417 46169389 ~ 46170144 (-) True G1815962
TU2077548 lncRNA upstream 14917 46171889 ~ 46172337 (-) True G1815963
TU2077571 lncRNA upstream 38791 46195763 ~ 46229192 (-) False G1815978
TU2077565 lncRNA upstream 61082 46218054 ~ 46222570 (-) False G1815978
TU2077572 lncRNA upstream 61082 46218054 ~ 46222570 (-) True G1815978
XM_036959085.1 mRNA downstream 90882 46011115 ~ 46028506 (-) True LOC118943596
XM_036959423.1 mRNA downstream 392994 45702953 ~ 45726394 (-) True LOC110501932
XM_036959422.1 mRNA downstream 392995 45702953 ~ 45726393 (-) False LOC110501932
XR_002470275.2 mRNA downstream 531676 45582551 ~ 45587712 (-) False LOC110501943
XM_036959419.1 mRNA downstream 540482 45550854 ~ 45578906 (-) True LOC110501933
XM_036959443.1 mRNA upstream 712859 46869831 ~ 46974131 (-) False spopla
XM_036959444.1 mRNA upstream 712859 46869831 ~ 46974132 (-) False spopla
XM_021579869.2 mRNA upstream 885253 47042225 ~ 47061327 (-) True LOC110501995
XM_036959446.1 mRNA upstream 929899 47086871 ~ 47103805 (-) False LOC110501994
XM_036959445.1 mRNA upstream 929899 47086871 ~ 47103828 (-) True LOC110501994
TU2077141 other downstream 278406 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 1445500 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 1565968 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 3441628 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 3514368 42604703 ~ 42605020 (-) True LOC110502155
TU2078613 other upstream 1068579 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 1244150 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 1314322 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 1905077 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 2111815 48268787 ~ 48291496 (-) True G1817668

Expression Profile