RNA id: TU2082958


Basic Information

Item Value
RNA id TU2082958
length 4677
lncRNA type sense_over
GC content 0.47
exon number 3
gene id tspearb
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 51395881 ~ 51450125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGTTAGTGTACTACGGTGCAGTGGAGTTAGTGTACTACGGTGCAGTGGAGTTAGTGTACTACGGTGCAGTGGAGTTAGTGTACTACGGTGCAGTGGAGTTAGTGTACTACGGTGCAGTGGAGTTAGTGTTTGCACGCTGATAGTTTATTGTCCTAACATGTCTGGATGTTTCCTCGTGTTCCTGATACTGAAACACTAACAGAACTACTAACAGTAGTTCTAATGCTGGCATCATGGGATAGAGATTGAACCCCAAAACACCCTGTATTAGAAAACATATCTCAATGCAGCTCTGTCACATGTCTGTATCTATTGTTGTTTCCCTCTTTAGAAAGAAGTTTGGAGACTTTCCACATCTTTCACCTGTCTCCTCACTTCCTGTCCTCTTTTCAGATTCATATCCTGTAATTACAACTGTATCACATCTTTCGCTGGAACAACTAGAAACAGCAACGTCATTAGAGTGCATcctcaaaatggcaccctattccctatttagtgcactccttttgaccagagccctatgggccgtggcaccctattccccatttagtgcactccttttgactaCCTCCTACCTCTGCTGCAACTCTATTTCCTTGCTTGGCTAAACAACATTTATTTCAGatctatttctgcttttatttggCAATATGCCTGGGGCCTGGGGAAGTCCTTGTTCATGTTGGTTTATTATTAAAGCGCAGGACATTATTATCGCGTCACACGGTGACATCATTTTGAATATTGAATAGCTCCCCCTGAGTTTATACTAGAGACTCACCGTGTCTGTCCTAGAGACTTACCGTTTCTGTCCTAGAGACTTACCGTGTCTGTCCTAGAGACTTACCGTTTCTGTCCTAGAGACTTACCGTGTCTGTCCTAGAGACTTACCGTTTCTGTCCTAGAGACTTACCGTTTCTTGTTGTGGTTCCAACTCAATCCCCTCTTTCCGTCAATATAAAGTTTGCGCCTGTTCCAAAACATGTGGTTTGTAAAAGTGGTCTTTTCTACACATGAGAGGATCCGGACTATAAAATCATCACGAAATTGTCTATAAAACTTGAACCGTTTGAGGTAGAAACTAATAAATTACCAACATCGAAAGACAAGACTCTCACAAACAGGACAGTGTATTTTGGCTCTGGGACATCCACAAGCTTTTACAGCAGTCATCTGAACTCTCGCGCAAGTCCTAATTTCCAAGAGGTCTTCTCACAAAACCAACTGTCCAGACCAAACCGTTGAAGCTACAAAGTATTACGTCACCCATATTGATGAGGGACACTCAcgggtctgttctgttctgcagcACACCAGTGGagtcatctgaaggtaacccggtACCAGCTATAGAAATGGCACAAAGTGCATAGGGGGTGAAAAGGGCCATTAATTACATGAGTTTTCTCATATCAGACACTACAAAACCGTTTTCCTTACGATTCATTGTTTGACTGTTTTGCCACGTACAAATGTGTTATTGAATGTGTTTCTACGGGGTAAATGATCCATTTAAATCCAATgactaaaatatacattttatgaCCATCTTAAATCAACTCCATATGTTGGCTAAGTAAATATCGTGATCTAAGGACTTAGACCTCGAGGGGTTAACCAAACAGTGTGTTGTTAATGGTGTGATTATGTCTCCTCCTCTGACCCAGAGTGTTGTTAATGGTGTGATTATGTCTCCTCCTCtgacccagagggttgttaatGGTGTGATTATGTCTCCTCCTCtgacccagagggttgttaatGGTGTGATTATGACTCCTCtgacccagagggttgttaatGGTGTGATTATGACTCCTCtgacccagagggttgttaatGGTGTGATTATGTCTCCTCCTCtgacccagagggttgttaatGGTGTGATTATGTATCCTCCTCTGACCCAGAGGGTTGTAAAATGGTGTGATTATGTCTCCTCCTCtgacccagagggttgttaatGGTGTGATTATGTCTCCTCTGACCCAGAGGGTTGCTAATGGTGTGATTATGTCTCCTCTGACCCAGAGTGTTGTTAATGGTGTGATTATGTCTCCTCCTCTGACCCACGGGATAACaatctgttgagaagcctttttgtcctagacttggcactccggtacagcttgccatgcggtagtagagaaaaccgtctatgactggggtggctggggtctttgacagtttttagggacttcctctgacaacgcctggtgtagaggtcctggatggcaggcagcttagccccagtgatgtactgaaccgtacgcattaccctctgtagtgtcttgcggtcggtggccgagcagttgccgtaccaggcagtgatgcaaccagtgcaatgctctcgatgttgcagctgtagaaccttttgaggatctcaggacccatgccaaatctttttagtttgctgagggggaataggctttgtcgtaccctcttcacgactgtcttggtgtgtttggaccatgttagtttgttgttgatgtggacaccaaggaccttgaagcactcaacctgctccactacagccccgtcgatgagaatgggagcgtgctcggtcctgcttttccaatagtccacaataatctcctaagtcttgatcaagttgagggagagacTGTTATcccggcaccacactgccaggtctctgacctcctccatttaggctgtctcgtcgttgtcggtgatcaggcctaccactgttgtgtcatctgcaaacttaatgatggtgttggagttgtgcctggtcatgcagtcaagggtgaacagggaatacaggaggggactgagcactcacccctggggggctccagtgttgaggatcagcgtggcagatgtgttgttacctaccctcaccacctgggggcggcccgtcaagaagtccaggatccagttgcaaagggatgtgtttagtcccagggtccttagcatagtgataagctttgagggcactatggtgtagaacgctgagctgtagtcaatgaatagcattctcacgtaggtcttccttttgtccagggtgggaaagggcagtgttgagtgcaatatagattgcatcatctgtggatctgtttgggcggtatgcaaattggagtgggtctagggtttctgggataatggtgttgatgtgagccatgaccagcctttcaaagcatttcatggctacagacgtgaatgctacgggtcggtagtcattcaggcaggttgccttcgtgttcttgggcacagtactagggtggtctgcttaaaacatgttggtattacagactccgaCAGGGAgacgttgaaaatgtcagtgaagacacctgccagttggtcagcgtatgcccggagcacacgtcttggtaatccgtctggccccgcagccttgtgaatgttgacctgtttaaaggtcttactcacgttggctacggagagcgtgatcacagtgttgcttgcctcgaagcaagcatggAAGTgaggttaattgccttgttcaggggcagaatgatagatttttaccttgtcagctcgaggattcgatccagcaacctttcggttactggcccaatgctctaaccactctaggctacctgccacccaaatcTCACTGTTCATCTGGCCAGAAGGACGGGACTCCACCCTTCACCAGTCCACTAGGTTCGGCTCTTTAAAGGCGGCCCACTATAGATAAAGAGGTAATTCTGTATACCGCCTGTGATACGTTTAATGCTTTAATTATGACCTGGTTGAATGCAGCTTTGTTTGTGATGTGTAAGTAGATTTATACCCTTTTCATGGGATGATTGAACGATGATGGAACGGTTGAATGACTAAACGACAGCCTCAGATCAATTAGCGAACCTGACTGTGAAGGTTAGTCTTCATGCTGTCACGTTTTCAATTGTTACTAAAAACGAATAGACTGGTCACATAAAACAGCGGTGTCTGACAGCAGAGGCTGAAACCTTAACTAAACGTATTGCATTGTAATGTAAAAAGAGtggcatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagacagTTCAGTAACACAGGTGATCGTGTGGGTTTCCGGCAGGTGTCAGATTATCAGAGAGATGAAAGTATCAGAAGTTCCACTATCCCGATGCAGATTAAAACTGTCTCTGATAACTCTGTGAGAATCGCTCCTCGTATCTCTCTGGCCCACTGGCAGTCGGGTAGATACACAGATAGATTCATGCAGGGATATCTAGCTATATTTGGACAGTATCTAAGTAGCAAATGTATTTCAACATGAGTTATGAAACACTTTAGACTACGGTGAGTTAGAGTGGGTTGAGcctgaggtggtgtgtgtgtgtgtgtgtgtgtgtgcatgcgtgtgtgtgtatgcatgcgtgtgtgtgtgttttggcgtGTGTGCccaaggtggtgtgtgtgtttaaaaaggTGTCCCTTCAGATGAGTGGAGGGTTCACAGTGAGGACAGACCTCTAGAGAGGACTCACAAACAGTACAAccccactcaacccatccctccagCCCCCTCACAGCCCCCTCCAGCCCCCTCACAGCCCCCTCCGCTCCCTCACAGCCCCATCACAGCCCCCTCCAGCCCCCTACAGCCCCCTCCAGCCCCCTCACAGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2083073 lncRNA downstream 35740 51409029 ~ 51409538 (-) True G1820204
TU2083072 lncRNA downstream 36284 51408655 ~ 51408994 (-) True G1820203
TU2083067 lncRNA downstream 48174 51396840 ~ 51397104 (-) True G1820198
TU2083047 lncRNA downstream 79215 51365742 ~ 51366063 (-) True G1820188
TU2083043 lncRNA downstream 91136 51353927 ~ 51354142 (-) True G1820184
TU2083091 lncRNA upstream 506 51450631 ~ 51452978 (-) True G1820222
TU2082955 lncRNA upstream 18730 51468855 ~ 51498192 (-) True ube2g2
TU2083109 lncRNA upstream 42839 51492964 ~ 51496304 (-) True G1820234
TU2083122 lncRNA upstream 57174 51507299 ~ 51507572 (-) True G1820239
TU2083123 lncRNA upstream 60660 51510785 ~ 51513339 (-) False myo10l3
XM_036959511.1 mRNA downstream 247 51395881 ~ 51445031 (-) False tspearb
XM_036959091.1 mRNA downstream 68340 51197603 ~ 51376938 (-) False bmpr2b
XM_036959508.1 mRNA downstream 255542 51109316 ~ 51189736 (-) True fam117bb
XM_036959509.1 mRNA downstream 272918 51109316 ~ 51172360 (-) False fam117bb
XM_036959506.1 mRNA downstream 359356 51059254 ~ 51085922 (-) False carf
XM_036959512.1 mRNA upstream 18672 51468797 ~ 51501268 (-) False ube2g2
XM_036959513.1 mRNA upstream 18672 51468797 ~ 51501268 (-) False ube2g2
XR_005038957.1 mRNA upstream 18672 51468797 ~ 51501268 (-) False ube2g2
XM_021579851.2 mRNA upstream 51728 51501853 ~ 51504398 (-) False LOC110501977
XM_036959514.1 mRNA upstream 62651 51512776 ~ 51699371 (-) False myo10l3
TU2083081 other downstream 18236 51426403 ~ 51427042 (-) True G1820212
TU2082908 other downstream 359469 51082989 ~ 51085809 (-) True carf
TU2082854 other downstream 419097 51023438 ~ 51026181 (-) True G1820053
TU2082808 other downstream 548125 50896572 ~ 50897153 (-) True G1820012
TU2082615 other downstream 948287 50495184 ~ 50496991 (-) False cd28
TU2083111 other upstream 51733 51501858 ~ 51504355 (-) True LOC110501977
TU2083131 other upstream 84847 51534972 ~ 51539722 (-) False myo10l3
TU2083132 other upstream 146428 51596553 ~ 51607205 (-) False myo10l3
TU2083733 other upstream 508955 51959080 ~ 51959638 (-) True G1820680
TU2083913 other upstream 946375 52396500 ~ 52412295 (-) False G1820825

Expression Profile